LOCUS       NM_173130               2890 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 27 (Vom2r27), mRNA.
ACCESSION   NM_173130
VERSION     NM_173130.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Herrada,G. and Dulac,C.
  TITLE     A novel family of putative pheromone receptors in mammals with a
            topographically organized and sexually dimorphic distribution
  JOURNAL   Cell 90 (4), 763-773 (1997)
   PUBMED   9288755
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Mar 5, 2021 this sequence version replaced NM_173130.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF016182.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-258               JAXUCZ010000001.1  75052244-75052501   c
            259-550             JAXUCZ010000001.1  75033347-75033638   c
            551-1357            JAXUCZ010000001.1  75032211-75033017   c
            1358-1585           JAXUCZ010000001.1  75031579-75031806   c
            1586-1709           JAXUCZ010000001.1  75030412-75030535   c
            1710-2890           JAXUCZ010000001.1  75018016-75019196   c
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..2890
                     /gene="Vom2r27"
                     /note="vomeronasal 2 receptor, 27"
                     /db_xref="GeneID:286914"
                     /db_xref="RGD:708442"
     exon            1..258
                     /gene="Vom2r27"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..2632
                     /gene="Vom2r27"
                     /note="putative pheromone receptor (Go-VN5)"
                     /codon_start=1
                     /product="vomeronasal 2 receptor, 27"
                     /protein_id="NP_775153.2"
                     /db_xref="GeneID:286914"
                     /db_xref="RGD:708442"
                     /translation="MLFAWTFISCFLQIPIILCSYRSSECLVKMNYRLKGKGNVVIVG
                     FFPAFAVYPLNKTIDWWMLKFSKEVMIEFKLKSYQYILAMRFAIEEINSNPHLLPNTS
                     LGFEINNVPHGQRYTLVKLFSSLSGSNYDIPNYISASESNSAAVLTGPSWTISECVGT
                     LLDLYKFPQLTFGPFDSLLSEQRRFSSLYQVAPKDTFLTPGIVSLMLHFHWNWVGLFI
                     IDDDKGAQTLSDLRNEMDKNGVCTAFVEMIPVIKGSFFTKSWKNHVQILESSSNVIII
                     YGDSDSLLSLIVNIKQKLLTWKVWVLISQWDVSKFDDYFMVDSLHGALIFSHHREEIP
                     NFTDFMQKYNPSKYPEDTYLHVLWHMYFNCSFVKKDCKIVHNCLPNASLGFLPGNIFD
                     MAMSEESYNVYNAVYAVAHSLHEMILNQVQFQTHEKGKKMVFFPWQLHPFLRERQLIN
                     QNGANEDLDCTRKSHVEYDILNFWNFPKGLGLNVKVGTFSPSAPKEQKLSISSNMIQW
                     ATGSTEIPQSVCSESCHPGFRKTHQEGRVACCFDCIPCPENEISNETDVDQCVKCPET
                     HYANIEKIHCLQKTVTFLYYDDPLGKTLCFMSLGFSSLTAAVLVVFLKNRDTPIVKAN
                     NLALSYTLLITLMLCFLCPLLFIGRPSTASCILQQNIFGLLFTVALSTVLAKTITVVI
                     AFKITSPGRIRRWLLISRAPNFIIPLCTLLQVFLSGIWLTTSPPFIDKDAHSEHGHII
                     IICNKGSAVAFHCNLGYLGALALVSYFMAFLSRNLPDTFNEAKFLAFSMLVFCSVWVT
                     FLPVYHSTKGKNMVAMEVFSILASSTSLLGIIFAPKCYLILLRPERNSLSYIRDKTYA
                     KSIKPS"
     exon            259..550
                     /gene="Vom2r27"
                     /inference="alignment:Splign:2.1.0"
     exon            551..1357
                     /gene="Vom2r27"
                     /inference="alignment:Splign:2.1.0"
     exon            1358..1585
                     /gene="Vom2r27"
                     /inference="alignment:Splign:2.1.0"
     exon            1586..1709
                     /gene="Vom2r27"
                     /inference="alignment:Splign:2.1.0"
     exon            1710..2890
                     /gene="Vom2r27"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttcaactag tcatgttcaa gaaggggcaa atactttgtt aatatgctct tcgcttggac
       61 ttttatctct tgctttctgc agattccaat tattttatgc tcctacagaa gcagcgagtg
      121 cttagtcaag atgaattatc gtttaaaggg gaaaggaaat gtggtgattg ttggattttt
      181 ccctgctttt gctgtctacc ccctcaacaa aacaattgac tggtggatgc ttaaattcag
      241 caaagaagtt atgattgagt ttaagttgaa gagctaccag tatattttgg ccatgaggtt
      301 tgccattgag gaaatcaaca gcaatcccca tcttttacca aacacatccc tgggatttga
      361 gatcaataat gtcccacacg gtcagaggta cactctggtc aaacttttta gctcactttc
      421 agggtctaat tatgacattc ctaactacat aagtgcaagt gagagcaatt ctgctgctgt
      481 acttacagga ccatcgtgga caatatctga atgcgtaggg acactcctgg atctttacaa
      541 atttccacag cttacttttg ggccttttga tagtctcctg agtgaacaaa gacggttttc
      601 ttctctgtac caagtggccc ccaaagatac atttctgacg cctggcattg tatctttgat
      661 gcttcatttc cactggaact gggtggggtt attcatcata gatgatgaca aaggtgccca
      721 gacactgtca gacttgagaa atgagatgga taaaaatgga gtctgcacag catttgtaga
      781 aatgatccca gtcatcaagg gttcattttt taccaaatcc tggaaaaatc atgtgcagat
      841 cctggaatca tcatcaaatg tgattattat ttatggggac tctgattctc tattaagctt
      901 aatagtaaat attaagcaga agttgctcac atggaaagtg tgggtactga tctcacagtg
      961 ggatgtttct aaatttgatg attatttcat ggtagactca ttgcatggag ctcttatttt
     1021 ttcacaccat cgtgaggaga ttcctaattt tacagatttt atgcagaagt acaacccttc
     1081 caagtacccg gaagacactt atcttcatgt attgtggcac atgtacttca attgctcatt
     1141 tgttaagaaa gattgtaaaa ttgtgcacaa ctgtttgcct aatgcctccc tggggttctt
     1201 gcctgggaac atatttgaca tggccatgag tgaagagagt tacaatgtat acaatgctgt
     1261 gtatgctgtg gcccacagtc tgcatgagat gattctcaac caagtacaat ttcaaactca
     1321 tgaaaaagga aaaaagatgg tattctttcc ttggcagctt cacccctttc taagggaaag
     1381 acaactcatc aatcagaatg gagcgaatga agatctggat tgtaccagga agtcacatgt
     1441 agagtatgac attctcaact tttggaattt cccaaaaggt cttgggctaa atgtgaaagt
     1501 aggaacgttt tctccaagtg ctccaaagga acagaaactg tccatatctt ctaacatgat
     1561 acagtgggcc acagggtcga cagagattcc acagtctgta tgcagtgaga gctgtcatcc
     1621 tggattcagg aaaacccacc aggaaggcag ggttgcctgt tgctttgact gcattccttg
     1681 tccagaaaat gagatctcca atgagacaga tgtggatcag tgtgtgaagt gtccagaaac
     1741 tcactatgca aacatagaga agatccactg cctacagaaa actgtgacat ttctgtacta
     1801 tgatgaccca ttggggaaga cactttgctt catgtccctg ggtttctcct cactcacagc
     1861 tgctgttctt gtggtgtttc tgaagaacag ggacaccccc attgtcaagg ccaataacct
     1921 ggctctcagt tacaccctgc tcatcacttt gatgctctgt tttctctgtc ccttgctctt
     1981 cattggccgt cccagcacag cctcctgtat cctgcagcaa aacatttttg ggcttctgtt
     2041 cactgtggct ctttccactg tgttggccaa aactatcact gtggttatag ccttcaagat
     2101 cacttctcca ggaagaatta gaagatggct gctgatatca agggccccta atttcattat
     2161 tcccttatgc accctgctcc aagtttttct atctggaatt tggctgacaa cctctcctcc
     2221 atttattgat aaagatgctc actcagaaca tggacacatc atcatcattt gcaataaagg
     2281 ctcagctgtt gctttccatt gcaaccttgg atacctggga gcactagccc tagtgagcta
     2341 ctttatggct ttcttgtcca gaaacctacc tgacacattc aatgaagcca agttcctggc
     2401 tttcagcatg ctggtgttct gcagtgtctg ggtcaccttc ctccctgtct accacagcac
     2461 caaggggaag aacatggtgg ctatggaagt cttctctatc ttggcttcca gtacatctct
     2521 cctaggcatc atctttgccc ccaagtgcta cctcatatta ttaagaccag aaaggaattc
     2581 acttagctat atcagggaca aaacatatgc taaaagcata aaaccttctt agcatcctta
     2641 tgtgcctctt aaattaaaca gcatcattga aggcaattgt tgttcttcac tatctgaaca
     2701 ctcacatata aagtcataat tgtacatttg atccaggggc tattatttct ttagatagtc
     2761 atatatatgt acctaatgct tttttcacat taaaatatgt gctgcatttt tcgtcttcct
     2821 cttctactta ctattagttt tgtgctattg atttaacttg caataaaatc caaatttctg
     2881 agttcttcca
//
