LOCUS       XM_039109059             954 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus vomeronasal 1 receptor 65 (Vom1r65),
            partial mRNA.
ACCESSION   XM_039109059
VERSION     XM_039109059.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086022) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            <1..954
                     /gene="Vom1r65"
                     /note="vomeronasal 1 receptor 65; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 26
                     Proteins"
                     /db_xref="GeneID:688794"
                     /db_xref="RGD:1585214"
     CDS             <1..954
                     /gene="Vom1r65"
                     /codon_start=1
                     /product="vomeronasal type-1 receptor 48"
                     /protein_id="XP_038964987.1"
                     /db_xref="GeneID:688794"
                     /db_xref="RGD:1585214"
                     /translation="SLKNVLYFQAGLGVIANIFLLCFYIFIILGHRPKPTDLISCQLT
                     FVHTIMFLTGGDILLTDLFVSLNIKNDFKCKATFYISRVMRGLSICVTCLLSLFQAVT
                     ISPCISVLAKFKQKLKKKNMISALIYIWFFNFSVSSDMIFYVGGFTIVNEMKEMKVTK
                     SCSLLPLNYIIKGLVLTMTTLRDVFLVGVMLTTSAYMVIILFRHQRQCKHLHSISHLR
                     ASPEKRATQTIVLLVVFFVIMYSVDFIISVTSVLLWMYDPVVLTVQKVVVNAYPTITP
                     LVQISFDNRIISMLKNLQELWYRVSSRCRRFGSLHSIPSPV"
ORIGIN      
        1 tcactgaaga atgtccttta tttccaagct gggcttggag tcatagccaa tatatttctt
       61 ctttgtttct atatcttcat aatcctgggt catagaccta agcccacaga cctgatctcc
      121 tgtcaactga ccttcgttca cacaataatg ttcctcactg ggggggatat tttgcttaca
      181 gacttattcg tgtcactgaa cattaagaat gacttcaaat gtaaggcaac cttttacata
      241 agcagggtga tgagaggcct ctctatctgt gtcacctgcc tcctgagttt gttccaggct
      301 gtcactatca gtccctgtat ctcggtgttg gcaaagttta aacaaaaact gaaaaaaaaa
      361 aacatgatca gtgctttaat ttatatttgg tttttcaatt tctctgtcag tagtgacatg
      421 atattttatg ttggtggttt taccattgtg aatgagatga aggagatgaa ggttactaaa
      481 tcatgctcac tcttaccctt gaactacatt attaaaggac tggttttaac aatgacaacc
      541 ttgagagatg tgtttcttgt aggagtcatg ctaaccacaa gtgcatacat ggtgattatc
      601 ttattcaggc atcagaggca atgcaagcat cttcatagca tcagtcacct gagagcatcc
      661 cctgagaaaa gggccaccca gactattgtg ctgctagtgg ttttctttgt gatcatgtac
      721 tcggtggact tcatcatctc agtgacctca gtcctgttat ggatgtatga tccagttgtc
      781 ctgactgttc agaaggttgt ggtaaatgca tatcccacaa ttactccttt ggtacaaata
      841 agttttgata acagaataat cagtatgctg aaaaatctgc aagagctgtg gtatagggtc
      901 agctccaggt gtaggcgttt tggatccctt cattcaattc cttcacctgt ttga
//
