LOCUS       XM_039097196             942 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus vomeronasal 1 receptor 63 (Vom1r63),
            mRNA.
ACCESSION   XM_039097196
VERSION     XM_039097196.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 3% of CDS bases
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..942
                     /gene="Vom1r63"
                     /note="vomeronasal 1 receptor 63; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 18
                     Proteins"
                     /db_xref="GeneID:494311"
                     /db_xref="RGD:1359330"
     CDS             10..942
                     /gene="Vom1r63"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:112..114,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: vomeronasal type-1 receptor
                     4"
                     /protein_id="XP_038953124.1"
                     /db_xref="GeneID:494311"
                     /db_xref="RGD:1359330"
                     /translation="MDSWNLTIRIIFLSQTTIGILGNFSLMFYYLILYXRQGTLKPTD
                     LILMHIMAANAVIILSSGVPTTMSVFRQKPFLNDFACKLLLYIQGFGRSVSIGATCLL
                     SVFQVMKISPRESCLTDHKMRTANYICCSTSLLWVLYLLIHSTFFMYTFIKRNSKNMT
                     KELEYAFCSIVGQDDIIESLYAALVLCPEVLFSVLITWSSTSMIVILYRHKQRVQHIH
                     SSHGSSRNSPEFRATQNILALVSAFLAFYTLSLISRGCITFSHNHYLWLVNITPIASL
                     FFPSFVPFVFISHYSIVSRFCLVSTLNKNLLLLF"
ORIGIN      
        1 aatcacagca tggactcctg gaatctgaca atcagaatca tttttttgtc tcaaactaca
       61 attggaattc taggaaactt ctctcttatg ttctactacc taatccttta ctaaagacaa
      121 ggcacattaa aacccacaga tttgattctt atgcacataa tggcagccaa cgctgtgatc
      181 attctctctt caggagtgcc caccacaatg tcagttttca gacagaagcc attcttgaat
      241 gattttgcat gcaagctcct attgtacatt caaggatttg gcaggagtgt gtccattggt
      301 gccacctgcc ttttgagtgt tttccaggtc atgaaaatca gccccaggga atcgtgtttg
      361 acagatcata aaatgagaac tgccaactac atttgttgct ccacttctct cctctgggtt
      421 ttgtatttgt tgatacattc cactttcttt atgtacacat ttatcaaaag aaatagcaaa
      481 aatatgacaa aagaactaga atatgcattc tgctccattg tagggcaaga tgatatcatt
      541 gaatcactct atgctgcact ggtgttgtgc cctgaagtgc tcttctctgt gctcatcact
      601 tggtccagta cctccatgat tgtcattctg taccgacaca agcagagggt tcaacacatt
      661 cacagttctc atggttccag cagaaattct cctgagttca gagccactca aaatatcctg
      721 gccctggtgt ctgccttttt ggctttttat actctctctt taatctcaag aggctgcatt
      781 actttttcac ataatcacta tttgtggctg gtgaacatca ctcccattgc ttctctgttt
      841 tttccctctt ttgtaccctt tgtttttata agtcattact ccattgtgtc cagattctgt
      901 ttggtctcga cattaaataa aaacctctta ctattatttt aa
//
