LOCUS       NM_001009512            1435 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus vomeronasal 1 receptor 6 (Vom1r6), mRNA.
ACCESSION   NM_001009512
VERSION     NM_001009512.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1435)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1435)
  AUTHORS   Young,J.M., Massa,H.F., Hsu,L. and Trask,B.J.
  TITLE     Extreme variability among mammalian V1R gene families
  JOURNAL   Genome Res 20 (1), 10-18 (2010)
   PUBMED   19952141
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jun 23, 2022 this sequence version replaced NM_001009512.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-109               JAXUCZ010000001.1  68499546-68499654
            110-179             JAXUCZ010000001.1  68500661-68500730
            180-1435            JAXUCZ010000001.1  68501859-68503114
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..1435
                     /gene="Vom1r6"
                     /gene_synonym="V1re2"
                     /note="vomeronasal 1 receptor 6"
                     /db_xref="GeneID:494231"
                     /db_xref="RGD:1359507"
     exon            1..109
                     /gene="Vom1r6"
                     /gene_synonym="V1re2"
                     /inference="alignment:Splign:2.1.0"
     exon            110..179
                     /gene="Vom1r6"
                     /gene_synonym="V1re2"
                     /inference="alignment:Splign:2.1.0"
     exon            180..1435
                     /gene="Vom1r6"
                     /gene_synonym="V1re2"
                     /inference="alignment:Splign:2.1.0"
     CDS             539..1435
                     /gene="Vom1r6"
                     /gene_synonym="V1re2"
                     /note="vomeronasal 1 receptor, E2; vomernasal 1 receptor
                     Vom1r6; vomeronasal V1r-type receptor V1re2; vomeronasal
                     type-1 receptor 4"
                     /codon_start=1
                     /product="vomeronasal 1 receptor 6"
                     /protein_id="NP_001009512.1"
                     /db_xref="GeneID:494231"
                     /db_xref="RGD:1359507"
                     /translation="MDLRTMAVGIVLSLQTALGILGNFSLLFYYLIIYYNEHTLKKID
                     MILIHVFTSNSLIVLSKGLPEVVRAFGWKQLFTDVGCKLTFYFQRLARSMSISTTCFL
                     SVFQAITISPWNSCLKEYKIKTTKFMGLSISFCWILFTLVNMLFPMYTATNRNKKNKT
                     PKRDFEFCHSVGRDKLVDIMYTAFCVFPEVLFSLVIVCSSAFMIAILYGHRKRVQHIL
                     HSHTSFRNSAENRATQTILILVCTFLAFYTLSSVLQGYIALSDNPSWGIMNITAIFSM
                     CFPMLGPFVMSRDFTFSRLCST"
ORIGIN      
        1 tttcatagta actcacatta tttctatctt cacagatctg ccatagaata ttcttctgaa
       61 gtaacttctg agcatgttcc cattcaccac agcaagccaa gttttctaga aagcctcact
      121 gtgcattggc tgaggcagaa aacttctaat ggatacagca gaaaacttct aatgaataat
      181 atgactctct actctggact atagaagtaa gcatcgattc catttgaatt ctcacttagt
      241 ggagcatcat atttttaatg ctaaaatttc attaaaatgt aagggaaatt cagtccataa
      301 atatgtgcat ttatagattt caaaattttc actggaaatt attaatggtg ataaaatatt
      361 tgttttgaaa cagagtcttc ctatgctcta cacaatgtct ttgaaaagtg ttgttttgtg
      421 atccttacac acacatccca ttcaagaaaa cttcactgta tgctttgact cattaaattt
      481 tattgtggcc atgatgttat aaaaatatat aaataaataa gaattgctta gtgacaggat
      541 ggacttgagg accatggcag ttggaatagt gctctcactt cagacagcac tgggtattct
      601 aggaaacttc tctcttcttt tctactacct aatcatttat tacaatgaac acacattgaa
      661 gaaaatagat atgattctaa tacatgtgtt cacatccaac tcgttgattg ttctttccaa
      721 aggactccca gaagtagtga gagcttttgg gtggaagcag ttattcactg atgttgggtg
      781 caagcttact ttttattttc aaagactagc tagaagtatg tccattagca ccacctgttt
      841 cttgagtgtc tttcaggcaa tcaccatcag cccctggaac tcctgcttga aggaatataa
      901 aatcaaaact acaaagttta tggggctgtc catttctttc tgctggatcc ttttcactct
      961 agtaaatatg cttttcccca tgtatacagc taccaatagg aataagaaaa ataagacacc
     1021 aaagagagac tttgaattct gccattctgt aggtcgtgac aaactagtag atataatgta
     1081 tacagcattt tgtgtatttc ctgaagttct attttctctg gtcattgtat gttccagtgc
     1141 tttcatgatt gctatacttt atggacacag gaagagggtt caacacattc tccactctca
     1201 tacctccttc agaaactctg ctgaaaatag agcaacacag accatcttga ttctggtttg
     1261 cactttccta gcattttata ctctttcttc agttttacaa ggctatattg ccctttcaga
     1321 taatcccagt tgggggataa tgaatatcac agccatattt tctatgtgtt ttcctatgtt
     1381 aggaccattt gtgatgagtc gtgatttcac tttttccaga ttatgctcaa cctag
//
