LOCUS       XM_039097322            1029 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus vomeronasal 1 receptor 56 (Vom1r56),
            mRNA.
ACCESSION   XM_039097322
VERSION     XM_039097322.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1029
                     /gene="Vom1r56"
                     /note="vomeronasal 1 receptor 56; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     Proteins, and 88% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:494277"
                     /db_xref="RGD:1359419"
     CDS             73..1029
                     /gene="Vom1r56"
                     /codon_start=1
                     /product="vomeronasal type-1 receptor 2"
                     /protein_id="XP_038953250.1"
                     /db_xref="GeneID:494277"
                     /db_xref="RGD:1359419"
                     /translation="MNIMLSGDTIFQIFLILQFSLGVLGNSALLLLYIYTFVFRPYYK
                     KLIDSVCIHLTIVNILLIIFLLTKDIMLSFGVTNFLDDIGCKAVLFSFRVSRGLSICS
                     TCVLSTFQVITITPSTSKWAWLKPKLSTWIFSSLLCSWLINILIYGYMLPMVVAKSNN
                     TLAGYGYSDGYCINKHPGNQNLGSFFSIILIHDLFYVTIMMWASLYMVIFLYRHRKGA
                     QHLRSPNLSSQTSPERKATHSILSLVSCFVLIYWLNNSVTLYGFYAKEKIPKLESVNS
                     LLTTCYPTICPFLLMKNNKVILQFISSFSVLRMTCFQSSLHD"
ORIGIN      
        1 tacaaacacc atttatattt tttgaataca gttcattcat ttggtactct agacctaaca
       61 aacctgaccc acatgaacat catgctttca ggtgacacca tcttccagat ctttctcata
      121 ttgcagttca gtcttggtgt tctagggaac tcagcactat tgttgttata tatatacact
      181 tttgtcttca ggccttatta taagaagttg atagattcag tttgtattca cctgacaata
      241 gtcaatattt tgctgatcat attcctattg acaaaagata tcatgttatc ctttggagta
      301 accaattttc tggatgatat cggttgtaag gcagtcttgt tttcattcag agtcagccgg
      361 ggtctgtcca tctgcagcac ctgtgtttta agcacgttcc aagtcatcac catcactccc
      421 agtacttcta agtgggcctg gcttaagcct aaactgtcta catggatttt ttcttcctta
      481 ctttgctcct ggcttattaa catactcatc tatggatata tgcttccaat ggtagtagcc
      541 aaatccaata atactcttgc tggctatgga tattcagatg gttattgtat aaacaagcac
      601 cctgggaacc aaaatttagg gtcatttttt agcattatcc ttattcatga tctcttctat
      661 gtgaccatca tgatgtgggc cagcctctac atggtgattt tcctctacag acaccgcaag
      721 ggagcccagc atctccgcag ccctaatctt tcctcccaga catctcctga gcgcaaagcc
      781 acccacagca tcctgtctct ggttagctgc tttgtgttaa tttattggtt gaacaactct
      841 gtcactcttt atggctttta tgcaaaggaa aaaattccaa aactggagtc agtaaattca
      901 cttttgacaa catgctaccc aaccatctgc ccttttttac tcatgaagaa taataaagtt
      961 attctgcaat tcatttcttc attttctgta ctgagaatga cctgttttca aagttcactc
     1021 cacgactga
//
