LOCUS       XM_039097319             924 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus vomeronasal 1 receptor 54 (Vom1r54),
            mRNA.
ACCESSION   XM_039097319
VERSION     XM_039097319.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..924
                     /gene="Vom1r54"
                     /note="vomeronasal 1 receptor 54; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins"
                     /db_xref="GeneID:365190"
                     /db_xref="RGD:1308663"
     CDS             1..924
                     /gene="Vom1r54"
                     /codon_start=1
                     /product="vomeronasal type-1 receptor 1"
                     /protein_id="XP_038953247.1"
                     /db_xref="GeneID:365190"
                     /db_xref="RGD:1308663"
                     /translation="MDTVVYTDLNWGIMFLIQTTAGILGNSFLFHMYNFPFFTTQMVR
                     PTNLIINQLIISNHLVLLSKWIPQTVTTLGLTSFLEDAGCKLFVLCLYRVARGVSLST
                     TSLLRGFQAIKLHPNTSEWLSLRIRSSKWIGTCCFLCWMLQLMLNIHVTIIANAPQNT
                     KNLTSKGIQRYCYSTTPQRFVFVLLAMIIALSDTICLVIRALASGSMVLVLRKHKQQV
                     QYIHRHSLSPKPAHEKRATRTIQILVTMFLSFYPVAAILSLCITETVNPSHWLITMSV
                     LISLAFPTLSPFVLNFTKTCFPPFCSFGQKK"
ORIGIN      
        1 atggatacag ttgtttatac agacttaaac tggggaataa tgttcctcat tcagaccact
       61 gctggaatcc taggcaattc ctttctcttt catatgtata acttcccatt tttcactaca
      121 caaatggtga gacccacaaa cttgattatc aatcagctca tcatatcaaa ccacctggtc
      181 cttctctcca aatggatccc tcagacagtg accactttgg ggttgacatc tttcctggaa
      241 gatgctgggt gcaaattatt tgttctctgt ttgtacagag tggccagagg tgtctccctc
      301 agtaccacgt ccctcctcag aggctttcag gccattaagc ttcaccccaa tacttctgag
      361 tggctgagtc ttagaattag atcctcaaag tggattggca cctgctgttt cctttgctgg
      421 atgctgcagc tcatgctcaa tatacatgta accattattg caaatgcccc acagaatacg
      481 aaaaacctga cttccaaagg aatccagaga tactgttact ccaccacccc tcagagattt
      541 gtttttgtat tactagcaat gataatagcc ctaagtgata caatatgtct ggtcatcagg
      601 gccttggcca gtggctccat ggtccttgtc ctacgcaagc ataagcagca agtccagtac
      661 atccatagac acagcctgtc cccaaagcct gcacatgaga agagagccac acggactatc
      721 cagatcctag tgaccatgtt tctctccttt taccctgtag ctgccatctt atcactgtgc
      781 ataacagaga ctgtgaatcc aagccattgg ctgattacca tgtctgtgtt gatttccctg
      841 gccttcccaa cactcagtcc ctttgtgctg aatttcacca aaacttgttt ccctccgttc
      901 tgttcttttg gtcaaaaaaa atga
//
