LOCUS       XM_017589540            1461 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus vomeronasal 1 receptor 42 (Vom1r42),
            transcript variant X4, mRNA.
ACCESSION   XM_017589540
VERSION     XM_017589540.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017589540.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017589540.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1461
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1461
                     /gene="Vom1r42"
                     /note="vomeronasal 1 receptor 42; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 36
                     Proteins, and 45% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:494303"
                     /db_xref="RGD:1549734"
     CDS             541..1461
                     /gene="Vom1r42"
                     /codon_start=1
                     /product="vomeronasal type-1 receptor 4 isoform X1"
                     /protein_id="XP_017445029.1"
                     /db_xref="GeneID:494303"
                     /db_xref="RGD:1549734"
                     /translation="MKMSSENFAMGIFLLSQITVGMLGNSSVLFHYIILIHTGKHLMP
                     KDLIIEHLTFANCLSIISKGIPRTMSDLGFKDFLDDIGCKLIMYISRITRGVSLYAMC
                     LLNCFQAIIISISNSRWMKLKYRATKYIGPSCSVSWLVHLVLNIIIPARMLGPSYKKN
                     ATNWVSYEYCSLFPSSSMTTVLYMFLLSFSDVLCLSLMACASVSMINILYKHKRQVKH
                     IHSTQHFLKVSPEDRATQTILILLCMFVISYSFSSVLTVLRTCSKYPVLWGVNVFTFI
                     EISFPILCPFVLIINMKSSFILFLPCFGKK"
ORIGIN      
        1 actgatgcca ggtgcatgcg cagtaccgtt gttcaccaca ggatggcgcc ctacaactaa
       61 accattccct tcaccagaag tttcaactaa aatgaaaaag agaatggaaa cagtgacgaa
      121 ggtatttgaa agttacttca aattcttgtg gagatgatgt tatcatgttt ctaggactaa
      181 gattaaagtg gctaatcttg tgggaaagaa taccatgaga tcatgaacct ctgagtgtag
      241 gagaatgtct caccagtttc aacagaaact cacttctcag ggtaacagct accaaaatgg
      301 tgtcatctaa cactgagctc atggtcatat gttatctgca agaacataca caaatagttc
      361 tcttttcaga tgaggcctgt tcatgcactc ctgtccactt ctggaaaaga gacacagacc
      421 aaaatatgat cttattcttg tgatcatcaa agcaatatcc ttgtatagca tttgttatta
      481 tgattaacaa gagtgaccta acatatagga gatacaggaa cagcacaatt gaaacttgga
      541 atgaaaatgt cttctgaaaa ctttgcaatg ggaattttcc tcctctctca gattacagtg
      601 ggaatgcttg gcaattcctc agtactattt cattacatca ttttaattca cactgggaag
      661 catttaatgc ccaaagatct gattatagag cacttgactt ttgccaactg cttgtctatc
      721 atctcaaaag gcattccacg gacaatgtca gatttgggat ttaaggattt tctagatgac
      781 atcggatgta aattgataat gtatatttct cgaataacaa ggggagtgtc cctttatgcc
      841 atgtgcctac tgaattgttt ccaagcaata ataatcagca tcagcaactc caggtggatg
      901 aagcttaaat acagagcaac caagtacatt ggtccctcct gctcggtcag ttggcttgtg
      961 cacctggttc taaacatcat tattccagca agaatgttag gccccagtta caagaaaaat
     1021 gctactaact gggtgagtta tgaatactgc tcattgtttc cttctagcag tatgacaact
     1081 gtactatata tgttcttact gtccttctct gatgtcctgt gtctgagtct catggcctgt
     1141 gcaagtgtct ccatgataaa tatcctctac aaacataaga gacaagtcaa gcatatacat
     1201 agtactcagc actttctaaa agtctcacct gaagacagag ccacccaaac tatcctcata
     1261 ttgttgtgca tgtttgtcat ctcttactca ttctcttctg ttctgactgt cttacggact
     1321 tgctccaaat acccagtgct ctggggagta aatgtattta catttattga aatatccttt
     1381 cccatacttt gtccctttgt tcttatcata aatatgaagt ctagttttat tctgttttta
     1441 ccctgctttg gtaagaaata g
//
