LOCUS       XM_039106563            4709 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus vinculin/alpha-catenin family member 1
            (Vinac1), transcript variant X2, mRNA.
ACCESSION   XM_039106563
VERSION     XM_039106563.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106563.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4709
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4709
                     /gene="Vinac1"
                     /note="vinculin/alpha-catenin family member 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:311416"
                     /db_xref="RGD:1561442"
     CDS             363..4685
                     /gene="Vinac1"
                     /codon_start=1
                     /product="uncharacterized protein Vinac1 isoform X2"
                     /protein_id="XP_038962491.1"
                     /db_xref="GeneID:311416"
                     /db_xref="RGD:1561442"
                     /translation="MNQGNHLCASRPRLQCFLFITSVHRHMEMDSSFWDDFGPTIQNR
                     AMEQILTPMVVQLCHLLISVERRDVQNKGLAPLQKVSGQLANASEELVRVASRLAEDS
                     KEEWLREEMKPVAESLTLSGKNILLVTEKLHLQPEYQGHWEELVATVQQILVDTKKVL
                     LLDDAAAVRRTLLAASWCLTCLEALEAAEDSTSLRTSLADLAAALLRLGGLTARWARD
                     ERLGRARHRLGCCVPALLAAARGHLRHPHDQQLVASRCRVFALARQSLGELLDALQPG
                     VAGTSTLSQNGALARRLCKLRQILEEPGPSHLRSELLEAPLAAVVWHCLRLAACSAPR
                     ERMHLVSRCRRLLQLRPGVHGLLRTSPDTNREALRAATDALFRGVRAGLLRQILDTFT
                     DTQSPLERLVQAALATSTIRSRCDSEASAETVQLLLYAFHNQAKQMIRVAHLVWVCCP
                     QQQTGRDLEAAVAGLQKLVIKANELFSQSPQTLGLDWSPAILQTLLEAWARESEHLLA
                     CFDVVLNIPEFLSLSIQDMTKHLDLYTRALRSGASREFSRSVAFLRGRATHIVQVMSR
                     YVGQDPDPIFRNGMRVVVQQLAQSSVTLGAATEGTRGGESTQNTDVILTMAKHLIYSA
                     QQVHEGLDGTNHPDILSPLRVQVQRFDMAKGWSYFILPSPQHPTASEMKYQQVPGTGK
                     NGPNTSFLPVEQLSYTVLPGTCIHGWGSPLPEVSKGISAVKSEDHQVVTLLCTNRPEQ
                     DSTVDTVRETRAQEETLGSEKMTRLQEFSTLAPSVIDLAKEDAHHANARSDRLLGVAF
                     RQSERTREDMQGLVARAGDWYPLCQQLFCHNLVTELPGSMAAFVELQQDLALMIQVAA
                     KSGPVNLDKKSSDLIGRPDLLLELQDRSEKTKMCAKQLLDQVLSSDRLQETTLREESI
                     DNACLLWAVAVQDLMQCMDRLSRRQGLFLLPLRQAVKNQQGLQEGLGQAAEISQRLQE
                     AAKLSSVLCGDARVKAEISFLCGKVHVLTDALLEVAHILVSSPKPCPSLSTRFELLCL
                     ELSLRAKTLTDYLTSINIAYEHIFQDAVGKSSQTRIEGMLSAIRVVQGIIAGGQESEP
                     FQEDLLVSLESILMLTKEVAKKVPVLREEQRVYMLDWLRWEWAAKVHHAMTQLQALEG
                     GQAEACRLLAQCLKPREEQATALEEDPDQFQPHCKEGAAGTTSRGSVDSQGAVPKGTP
                     ESSVGTCADKLATIRTTTADMNMNQSGSLSLPPAQMDQTVSEDSSADSQNRIAQITQE
                     MATEVLLMAQSLRKRGQILTKDQLIASARKVSASGKNFTRLIRIIAKNCIDQRCSQDL
                     LCMVEQIQTMSSQLSIISSVKASLTRSKSSEELLVDNAQRLLQAVSETVRAVEAACLR
                     GLRWPSSDPEELEVAAFCMQWKRKLLRHRLQEASNEDCDELGLRKTSTRKLPALVALV
                     QDTL"
ORIGIN      
        1 ggaactgaac ttaggttgtc tgctcttaac cactgagcca tctgtctcac ccgagtcttc
       61 ctcttttaat cttcatttgg gggactattt tgaatgaggg actaagattg aaccagttat
      121 agaatcccag tcctgagact gacattagct gtctctcaaa ctgtctgttt tatggcttgt
      181 gagaccattg gttattctgc tgtcttcttc tggacctgtc ttattgtgtc tttgcctttt
      241 ccccatacgt ttctgctaag ccacaggata tcatgcattc ataaggcctt tagtgtaaac
      301 cttatgtatc cctttaatat ttcatagatc tctcccttta tggctgcgaa accaggtgag
      361 cgatgaatca agggaatcac ttgtgtgcca gcaggcctag gctacaatgc tttctgttta
      421 taacttctgt tcacagacat atggagatgg actcttcctt ctgggatgac tttggtccta
      481 caatacagaa cagggccatg gaacagatcc ttacaccaat ggttgtccag ctgtgtcatc
      541 tgctgatctc ggtggagagg agagatgtac agaataaagg tcttgccccc ctgcagaagg
      601 tgtcggggca actggccaac gctagtgagg agcttgtgcg agttgccagc aggctggcag
      661 aagactctaa ggaggagtgg cttagggagg aaatgaagcc agtggctgag tctctgaccc
      721 tttctgggaa gaacatcctg ctggtaacag agaagctcca cctgcagccg gagtatcagg
      781 gccattggga ggagctagta gccacggttc agcagatcct ggtggacact aagaaggtct
      841 tgctccttga tgatgctgca gcggtgagga ggaccctgct agcggccagt tggtgtctga
      901 catgcctgga ggcgctggag gcggcggagg attccacctc gctgcgcacc tcgctcgctg
      961 acctggcggc tgcgttgctc cgactgggcg gcctgaccgc gcgctgggcc cgggacgagc
     1021 gtctgggtcg agctcgccac cgcttaggat gctgcgtccc cgcgctgctc gcggccgccc
     1081 gtggtcacct caggcatccc cacgaccagc agctggtggc ctcgcggtgc cgcgtcttcg
     1141 ctctggccag gcagagcctc ggagaactcc tggatgcgct gcagcccggc gtcgcaggga
     1201 ccagcacgct ctctcagaat ggcgcattgg cacgtcgtct gtgcaagctg cgacagatcc
     1261 tggaggagcc cgggcctagt cacctgcgca gtgagctact ggaagcacca ctggccgccg
     1321 tggtgtggca ctgtctgcgc ctagccgcct gctccgcgcc acgggagagg atgcacctgg
     1381 tgtcccgctg ccggcggctg ctgcagctcc gacccggggt gcacggactt ctccggacca
     1441 gcccagacac caaccgcgaa gctctgcggg ccgcgaccga cgcgctcttt cggggagtcc
     1501 gtgctggctt actgcgccag attctggaca cgttcacaga tacccaaagt cctctggaga
     1561 ggctggtcca ggccgccttg gcgacttcca ctatcaggtc ccgctgtgat agcgaagcct
     1621 cggcagagac tgtccagctt cttctctatg ctttccacaa ccaagccaag cagatgatcc
     1681 gggtggcgca cttggtttgg gtctgctgcc cacaacagca aactggcaga gacctggagg
     1741 ctgccgtggc aggtcttcag aagcttgtga tcaaagcgaa tgaactcttt tcacaaagtc
     1801 cccaaacgct tggcctggat tggagtcctg ccatcctgca gaccctgctt gaggcctggg
     1861 ccagggaatc cgaacacctc ctggcatgct ttgatgtcgt tctcaacatc ccagaattcc
     1921 tgagtttgtc catccaggat atgactaaac atttggactt atacacaagg gctctgagga
     1981 gcggagcgtc cagggagttt tccagatctg tggcattctt acgcggaaga gccacccaca
     2041 tagtgcaggt gatgagcaga tatgtgggtc aagaccccga tcccattttc cggaatggga
     2101 tgagagttgt ggttcagcag ctggcacagt cttccgtgac cctaggtgca gccactgaag
     2161 gcaccagagg tggggagagc actcagaaca cagatgtcat cttaaccatg gcaaagcacc
     2221 tcatctactc agcccagcaa gtccacgagg gcctggatgg gaccaaccat ccagatatcc
     2281 tcagtccact tcgagtccaa gtccaaaggt ttgacatggc caagggatgg tcttatttta
     2341 ttctccccag cccccagcat cccacagctt ctgaaatgaa ataccagcag gtacctggga
     2401 cagggaaaaa tggcccaaac acctctttcc taccagtaga acaactttcc tacacagtgc
     2461 tccctggcac ctgcatacat gggtggggat ctccactccc tgaggtcagc aaaggcatca
     2521 gtgctgtgaa gagtgaggat caccaggtag tgaccttact gtgcaccaac aggccagagc
     2581 aggattctac tgtggataca gtccgagaga ccagagctca ggaagaaacc ctggggtcag
     2641 agaagatgac aagactacaa gaattctcaa cactggcacc ttcggttatt gatctagcca
     2701 aggaggatgc ccatcacgca aatgctagaa gtgacaggct tctgggagta gcttttcggc
     2761 aatccgagag aaccagggaa gacatgcagg gtttggtagc cagggctggc gactggtacc
     2821 ctctgtgtca acagctattt tgccataacc tagtgactga attaccgggg agcatggcag
     2881 catttgtgga gcttcagcag gatttggctt tgatgattca agtagcagcc aaaagtggcc
     2941 ctgtgaattt ggacaaaaag agctctgacc taatagggcg cccagacctg cttttagagc
     3001 tacaagacag atcagaaaag acaaagatgt gtgctaaaca gctgttggac caagttctgt
     3061 cctctgaccg actccaagag accacactga gggaagagag catcgacaat gcgtgtcttc
     3121 tatgggcagt agctgtccaa gacctgatgc agtgtatgga cagactcagc aggagacaag
     3181 gcctgttcct actgcccctg cgacaggcag tgaagaacca gcaagggttg caggaagggt
     3241 taggtcaggc agcagagatt tcccagcggt tacaagaggc cgccaagctg tctagtgttc
     3301 tatgtgggga tgcacgggta aaggccgaga tctcctttct gtgtgggaaa gttcatgtac
     3361 tcacagatgc cttgctggag gtggcacaca tcttggtctc ctcccccaag ccatgtccca
     3421 gcctctctac acgttttgaa cttctctgct tggaactcag ccttcgagcc aaaaccctga
     3481 ctgactacct gaccagcatc aacatagcct atgagcatat attccaagat gctgtcggca
     3541 agagctccca gaccaggata gaaggcatgt tgtctgctat ccgagttgtg cagggaatca
     3601 tagcaggagg tcaagagtct gaacccttcc aggaagacct tcttgtgtct ctagagagca
     3661 ttcttatgct cactaaggaa gtggccaaga aggtccccgt gctccgagag gagcagaggg
     3721 tgtatatgct ggactggctt cggtgggaat gggcagctaa agttcaccat gcaatgactc
     3781 agctccaggc cttggagggt ggtcaagcag aggcctgtag actcctggcc caatgcttga
     3841 aacccaggga ggagcaagca acggccctag aagaggatcc tgaccagttc cagccccact
     3901 gtaaagaggg tgcagcagga accacttcta gaggcagtgt ggattctcag ggtgctgttc
     3961 ccaaaggcac cccagaaagc tcagtgggga cctgtgctga taagctagcc accatcagga
     4021 ccaccacagc agacatgaac atgaaccaga gtggcagcct atctctgcct cctgctcaga
     4081 tggaccagac tgtttcagag gacagcagtg cagacagtca gaacagaata gcccagatca
     4141 cacaagagat ggccaccgag gtgctcctga tggctcagag cttgaggaag agagggcaaa
     4201 tcctgaccaa agatcagctc attgcttctg ccaggaaagt ctcagcttct gggaaaaact
     4261 tcaccagact cattcgcatc attgctaaga actgcataga ccagagatgc tcccaggatc
     4321 ttctgtgtat ggtggagcag attcaaacca tgagcagcca gctcagcatc atctccagtg
     4381 taaaggcctc cctcacaaga agcaagtcct ctgaagagct ccttgtagac aatgcacagc
     4441 ggctcctcca ggctgtctcc gagacggtga gggctgtgga agctgcctgt cttcggggtt
     4501 tgagatggcc ttcctcagat ccagaggaat tggaggttgc tgccttctgc atgcagtgga
     4561 agaggaaact actacgacac cgacttcaag aagcctcaaa cgaagactgt gatgagctgg
     4621 gtttacgaaa aacaagcaca aggaaactcc cagccttggt ggccctggtc caagacacat
     4681 tgtaaagctg agggatcgtc tccctgacc
//
