LOCUS       NM_001191617            2689 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus villin-like (Vill), mRNA.
ACCESSION   NM_001191617 XM_006244085 XM_217296
VERSION     NM_001191617.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On or before Jun 3, 2021 this sequence version replaced
            XM_006244085.2, NM_001191617.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.3197973.1,
                                           SRR26643299.37720.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-30                JAXUCZ010000008.1  127654681-127654710
            31-102              JAXUCZ010000008.1  127659082-127659153
            103-177             JAXUCZ010000008.1  127659307-127659381
            178-374             JAXUCZ010000008.1  127659667-127659863
            375-483             JAXUCZ010000008.1  127661261-127661369
            484-594             JAXUCZ010000008.1  127662639-127662749
            595-794             JAXUCZ010000008.1  127663056-127663255
            795-873             JAXUCZ010000008.1  127663604-127663682
            874-972             JAXUCZ010000008.1  127663767-127663865
            973-1108            JAXUCZ010000008.1  127664389-127664524
            1109-1212           JAXUCZ010000008.1  127664753-127664856
            1213-1350           JAXUCZ010000008.1  127666788-127666925
            1351-1509           JAXUCZ010000008.1  127667039-127667197
            1510-1689           JAXUCZ010000008.1  127667932-127668111
            1690-1835           JAXUCZ010000008.1  127668639-127668784
            1836-1980           JAXUCZ010000008.1  127669473-127669617
            1981-2166           JAXUCZ010000008.1  127671313-127671498
            2167-2238           JAXUCZ010000008.1  127671705-127671776
            2239-2496           JAXUCZ010000008.1  127671955-127672212
            2497-2689           JAXUCZ010000008.1  127672550-127672742
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..2689
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /note="villin-like"
                     /db_xref="GeneID:301057"
                     /db_xref="RGD:1304843"
     exon            1..30
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            31..102
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     CDS             37..2610
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /codon_start=1
                     /product="villin-like protein"
                     /protein_id="NP_001178546.2"
                     /db_xref="GeneID:301057"
                     /db_xref="RGD:1304843"
                     /translation="MDSNQVLPAINSHRALQIWITENLKMLPLPEKAHGNFFEECCYV
                     VLHSPKATQGGSRDLHCWIGKEASTEAQEAAVSFMHRLQQDLGDQTVLHRESQGHESD
                     CFHSYFRPGVIYRKGGRASALKLGESNVYNVQRLLHIRGRKHVSATEVALSWNSFNKG
                     DIFLLDLGKVMIQWNGPKASICEKARALSLTCSLRDRERGGRAQIRVVDAENKATDLM
                     SIMEAVLGRRSGSLCASVPSNSVSQLQKANIRLYHVFEKGTDLVVQELATRPLTQDLL
                     QEDGCYLLDQGGFKIYMWQGRKSSPEERKAAFSRAVGFIQAKGYPNYTNVEVVNDGAE
                     STAFQQLFWTWSKELNGKKHPRQSKLMQQVNLEVGKLHTQPELAAQLRMVDDGSGKVE
                     VWYIQGSQRQPVDPKHHGQLCSGNCYLVLYKYQKLGRVQYILYLWQGHQSTVEDVKAL
                     NCNAEELDLLHQGALVQGHVTMGREPPHFLAIFQGQLVVLQGNAGNKGGRLPISDTRL
                     FHVQGTESHNTRTMEVPARASSLTSSDVFFLITSHVCYLWFGKGCHGDQREMARTVVT
                     VFPGNNKETVLEGQEPLHFWEALGGRAPYPSNKRLPEEISSIQPRLFECSSHSGHLVL
                     TEVVFFGQEDLDKYDIMLLDTCQEIFLWLGEAAGEWKKAAVAWGHEYLRTHPAERSLA
                     TPIIVVKQGREPATFTGWFVTWDPYKWTSSQSYEEMVEGSLGPGSAISEITAEVHNFQ
                     LTARPSDSEAGRPTLLAFKGSQDSPENELELGLRVDGETPSMNHTSSCSSSMINGSLP
                     RERLMHQALEDLPQGVDPARKEFYLSDSDFQDIFGKSKEEFYSMAKWKQQQEKKKLGF
                     F"
     exon            103..177
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            178..374
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            375..483
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            484..594
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            595..794
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            795..873
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            874..972
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1108
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1212
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            1213..1350
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            1351..1509
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            1510..1689
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            1690..1835
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            1836..1980
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            1981..2166
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            2167..2238
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            2239..2496
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
     exon            2497..2689
                     /gene="Vill"
                     /gene_synonym="RGD1304843"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaggaaggt gcagaggcag ttcccagaag cccaggatgg acagcaacca ggtcctccca
       61 gccatcaaca gccacagagc cctgcaaata tggattactg agaacctaaa gatgctgcca
      121 ctgcctgaaa aggctcatgg gaatttcttc gaggaatgct gctatgttgt cctccacagt
      181 ccaaaggcta cccagggagg atcccgtgac ctgcactgct ggattggaaa ggaggccagc
      241 acagaggccc aggaggctgc agtctccttt atgcaccgtc tgcagcagga cctaggagac
      301 cagacggtgc tgcaccgaga gtcacagggc cacgagtccg actgcttcca cagctatttc
      361 cgcccgggag tcatctacag gaagggaggc agagcttctg ctctcaagct cggggagagc
      421 aacgtgtaca atgtccagcg actgctgcac atcagaggaa ggaagcacgt gtccgccact
      481 gaggtggcct tgtcctggaa cagcttcaac aagggtgaca tcttcctgct ggacctgggc
      541 aaggtgatga tccagtggaa tggacccaaa gccagcattt gtgagaaagc acgggcgctg
      601 agcctgactt gcagcctcag agacagagag cgtggtggcc gtgcccagat ccgtgtggtg
      661 gatgctgaga ataaagccac cgacctcatg agcatcatgg aggctgtgct gggcagaaga
      721 tcgggcagcc tgtgtgcctc tgtgcccagc aacagtgtta gccagctgca aaaggccaac
      781 atccgtctct accatgtctt cgagaaggga acagacctgg tggtccagga actggcgacc
      841 cgcccactga cccaggacct gctgcaggag gatggctgct atctcctgga ccagggtggc
      901 ttcaagatct acatgtggca gggacgaaag tccagccccg aggagaggaa ggctgccttc
      961 agcagggctg tgggcttcat ccaggccaag ggttacccaa actacaccaa tgtggaggtg
     1021 gtgaacgacg gcgcggagtc cacagccttc cagcagcttt tctggacatg gtcgaaggag
     1081 ctaaatggga aaaaacaccc gaggcagagt aaactgatgc agcaggtaaa cctggaggta
     1141 ggcaagcttc acacacagcc cgagctcgcg gcccagctca gaatggtgga cgacggctct
     1201 gggaaggtgg aggtgtggta catccagggc tcacaaaggc agcctgtaga tcccaagcac
     1261 catggccagc tgtgctcagg aaactgctac cttgtcctct acaagtacca gaaactgggg
     1321 cgtgtccagt acatcctgta cctgtggcag ggccaccaaa gcactgtaga agacgtcaag
     1381 gccctgaact gcaacgctga ggagttggac ctcttacacc agggtgctct ggtgcagggg
     1441 catgtgacca tgggcagaga gcctccccac ttccttgcca tcttccaggg gcagctggtg
     1501 gtccttcagg ggaatgcagg caacaaaggg gggaggctgc caatatccga caccaggctt
     1561 ttccacgtgc aagggaccga gagccacaac accaggacta tggaggtgcc agcccgagcc
     1621 tcctccctca cttccagcga cgtcttcttt ctgatcacaa gtcacgtctg ttacctctgg
     1681 ttcgggaagg gttgtcatgg ggaccaacgt gagatggcgc ggacagtggt aactgtcttt
     1741 ccagggaata ataaggaaac agtgctggag ggtcaggagc ctctccactt ctgggaagcc
     1801 ctcggaggcc gggcccccta tcccagtaac aagaggcttc ctgaggagat ttccagcatc
     1861 cagccccgac tgtttgagtg ctccagccac tcgggccacc tggtcctcac ggaagtggtg
     1921 ttctttggcc aagaggactt agacaagtat gacatcatgc tactagacac ctgtcaggag
     1981 atcttcctgt ggcttgggga agctgcaggt gaatggaaga aagcagcagt agcctggggc
     2041 catgagtacc tgaggactca cccagcagag aggagcctgg ccacacccat cattgtggtc
     2101 aagcagggcc gtgagcctgc cacctttact gggtggtttg tcacctggga cccctacaag
     2161 tggacgagca gccagtccta cgaggagatg gtggagggca gcctgggtcc gggatctgca
     2221 atctctgaga taacagcaga agtccataat ttccagctaa ctgcacggcc gagtgatagc
     2281 gaggcaggcc gcccgacact gctggccttc aagggttccc aggatagccc agagaatgag
     2341 ctggaactgg gcctcagggt ggatggcgag acgcccagca tgaatcacac cagcagctgc
     2401 agtagctcaa tgatcaatgg gagcctgccc cgggaaaggc tgatgcacca ggccctagag
     2461 gacctgccac agggtgtgga cccagcccga aaggagttct atctctcaga ctccgatttc
     2521 caagacatct tcgggaaatc caaggaggag ttctacagca tggccaagtg gaagcagcag
     2581 caagagaaaa agaagctggg cttcttctga cctggggaac cctgcccctc acaccctgag
     2641 attcctcctg ggttaactcc cacttcctaa taaaagccag tggctggca
//
