LOCUS       XM_006247980            6006 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus vestigial-like family member 3
            (Vgll3), transcript variant X1, mRNA.
ACCESSION   XM_006247980
VERSION     XM_006247980.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 3, 2024 this sequence was replaced by
            NM_001427793.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006247980.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6006
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6006
                     /gene="Vgll3"
                     /note="vestigial-like family member 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 13 ESTs, 4 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 59 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:498038"
                     /db_xref="RGD:1560030"
     CDS             558..1541
                     /gene="Vgll3"
                     /codon_start=1
                     /product="transcription cofactor vestigial-like protein 3
                     isoform X1"
                     /protein_id="XP_006248042.1"
                     /db_xref="GeneID:498038"
                     /db_xref="RGD:1560030"
                     /translation="MSCAEVMYHPQPYGAPQYLPNPVAAATCPTACYHPAPQPGQQKK
                     LAVYSKMQDSLEVTLPSKQEEEEEEEDEDEEEEKDQPAEMEYLNSRCVLFTYFQGDIG
                     SVVDEHFSRALGQANTLHPESAISKSKMGLTPLWRDSSALSSQRSNFPTSFWTSSYQP
                     PPAPCLGGVHPDFQVTAPHGTFTTADPNSWPGHGLHQTGPAPPPTASESWHYPLASQV
                     SPSYSHMHDMYMRHHHPHAHMHHRHHHHHHHPTAGSALDPAYGHLLMPSVRAARIPAP
                     QCDITKTDLTTATTATSAWAGAFHGTVDIVPSVGFETGLQHQDKSKESTWY"
ORIGIN      
        1 tgataaactg ctcctgagag ctggggaggc gagctccccg cctccccaca ttccggctat
       61 actgcccccg cctcctggtc ctcgcccagc cgcccgcgct agtgatagga caagtcccgg
      121 gcgtgcattg tgtgtatgca aagcatcgct tggctcccgg ggtgactcta gcggggatcc
      181 tgctgcagcg gcagctagcg ctggggagta cgctcctgtc tctgatgcca ccgcctgagc
      241 ctgagcacag cgctgtcatg ctcctgccgc ggggcgggct acagcgtcgt cccgtcgcta
      301 tataagcgcg agcagagggg gcactcggag gggttgaaaa tgaaggtgcc cgcgcatggg
      361 ccgccgctga ttgccaaccc ctcccgagct cgctcccggc gcacagcccg aggccgccga
      421 ggatccgcct tagccgcagt agcagctggt tcagcgacgc ggacggcagc tgcggcggcg
      481 gcggtggcgg tggctcccct cgcgccagcg cgtagagcag cggcggcgac tccggggccg
      541 ccgctggccc cgctgccatg agttgtgcgg aggtgatgta tcacccccag ccgtatggag
      601 cgccccagta tctgcccaac cctgtggcag ctgcaacctg ccctacagcc tgctatcatc
      661 cggcgcccca acctggccag cagaagaagt tagcggtata cagcaagatg caggactctc
      721 tggaagtcac ccttcccagc aaacaagagg aggaggagga ggaggaggat gaggatgagg
      781 aggaggagaa agaccagcct gccgagatgg agtaccttaa ctctcgctgt gtccttttca
      841 cttatttcca gggagacatt gggtcagtag tggatgaaca cttctcaaga gctttgggcc
      901 aagccaacac cttgcatccc gaatctgcca tttcaaaaag caagatgggg ctaacccccc
      961 tatggcgaga cagctcagct ctttcaagcc agcggagtaa ttttccaact tccttttgga
     1021 ccagctctta ccagccccca ccggcacctt gtttgggggg agttcatcct gacttccaag
     1081 tcactgcacc ccacggcacc tttacaacag cagaccccaa ctcttggcca ggacatggtc
     1141 tgcatcagac tggccctgcc ccacccccta ctgcatctga gtcttggcac tatcctctgg
     1201 catctcaggt gagcccatcc tacagccaca tgcatgacat gtacatgcgg catcaccatc
     1261 ctcatgctca catgcaccac cgccaccacc accatcacca ccacccaact gctggctctg
     1321 ccctggatcc cgcgtatggg cacctgctga tgccatcagt gcgtgctgcc aggattcctg
     1381 ctccccagtg tgacatcaca aagacagatc tgactacagc caccactgct acctcagcat
     1441 gggccggagc ctttcatggg acagtggaca tcgtgccaag tgtgggcttc gaaacaggtc
     1501 ttcagcatca ggacaagagc aaagagtcaa cttggtactg aagcatggtg tcagcaggtc
     1561 atacggcagc gtgaatccaa ggaccctctg ggaaaacatg ccgttggggt atcccatgca
     1621 ggaatgggac atgggaaaca tggactgaga agaggacagg gaaggccatt gtctttagat
     1681 ttgaaccgtt tctggataaa gcatagtggg tcctcctact ctttgaagaa aagcttttgg
     1741 tttgttctcc gtcatctgag cctttgtcac ctgtgcgacg tctcatttta ctcaccttgt
     1801 acgaggacct gggctagatt tttgtgcttt gtctttttct tctttttttt ctttttgttt
     1861 ttttcctttt gaaccagcca ccttataaga agatgattta ccatatgaaa atgctcattc
     1921 cttcaggaaa actaatatct ctatcttcat ctatttttgt ggaaatacaa aatggttggt
     1981 ttaacataga ggggatattt ttgaagatgt aattgttttt tgttttgttt tgttttgttt
     2041 tacttaatct tgtagcaatc gttgagttct gtttaaagaa cttgctctca gaaaagcact
     2101 ggctaaaatg tttaagtgct gatctttaaa atgtttgtaa tgcgctttgt ctgtgcttcc
     2161 gagggtacct caaggtttcg tcctttctac aacagtggca cgaccataaa cagaccttgc
     2221 aatgttgtgt ttatgttgaa actcagtgaa gacttaattc gatgatagct ctcttagttt
     2281 gcaattatat atgtatgtgc agcttgaaag gggcattttc ttttaaagag ccacaaagta
     2341 aagggtattt ctccaaaata gttcttggaa gtgactaaca attaaattta ggttaatgag
     2401 caatacttct ctgtgtagtc cagcctatct taacaattag gaatagagct tacatacagc
     2461 ttcaaaatag gaaaaagcaa cacacttagc gatgataact gtggatctca ctgacaaatt
     2521 ttcctaactt ctaaccattc attcatggct gtttcaaagg tcataatttg gatgactttt
     2581 gttttctgga gtatcagcac atgccaaagt gctgactatc ccccatttct gtaaactgaa
     2641 aagtaatgta ttctggatgt aatgttttaa tttgatcatt ctgcaagatt tttcatttgc
     2701 ttttaagtgt aattagtttc tcaaaaatta gagcaaaata aaagtggtaa tggatttaag
     2761 tttatgcttc aattacacaa actggttgaa agactgaaaa cttgagcagt aaacttccca
     2821 tggcccagaa gataaaggag tgaagtttga agtcacttga agattcaaga gaagattagg
     2881 caaaggttag gactatgaag gtagcaatgg ctggcaaatc aaagaagcag catatttttt
     2941 ttttcctttc agttgctccc agccatagag gatgttagtg tagtacagat gcttttattt
     3001 gataatgttt ctcaaattct cccatttctc tcagcccaca caaaacagaa ggttaagtca
     3061 cgtgctacat tctggtttta attgtgaact tcatgggtga gaatactttg cacattagca
     3121 acactacaag cagctaggca gaattctccc aactcatttc caaacatttc acttggctat
     3181 atcgatagat atttgtttct ctccctgctg tgttttgaat tataaaccca gttcatctcg
     3241 tgtatccact tgtatcttga ctccatcatt tcttcatctt gattttcctt taacacagtc
     3301 ttcacatttt tatcagtaga gtctagactt aaggtagctt accagtttag gaactttagc
     3361 atcctgataa tggtctcatt taattctatg catttttatc tggatgttga taacaaataa
     3421 aaattgcatc tgcataaaca tgtggagcgt agagttgagt gaatctatca agtcatgttg
     3481 tcttgaatcc ttgaatccag tggtaagaac tgaacactca gcagttcccg tgagggagcc
     3541 ttattggttg gtatcacatt tccccttggg atatattaac ttacatcgca gtgtctccta
     3601 aaacactacc acacttgaag tcactgagct cacttcattg aatttaatca gataagggaa
     3661 gataagagga ctaacttgtt ttcttcttca ttatcattct ggattgtaaa agaaagtaga
     3721 taatgtagtg gtttttgctc tgatatcctc ataactatgc ccaaaacatg atttggttca
     3781 agaccaaagg aaagggaaga atctaaattc tatggcgtgc aacaaaggcg tgagctcgcc
     3841 ctatgagaac aggcataggt aacagtggcc cactgtcatc aaaggagggg accagaatct
     3901 aataaaggag aaagaacatg tttctctaac tatccagcat ccctcagtgt tttaacatta
     3961 ctgttacaag gagaagtaat aaagggagct atactatagc aaaataagta atctgaattt
     4021 atttgcatat caagtgctat tacaccctgg tctggattct cactttaaag tatgactgct
     4081 atacagaagg gtcactgcct cctgactctc tgaattcatt agacccactc tacttttgac
     4141 tgttttacaa cttaaatttc cttctatttg aaagcctgca catttgacac cagaagacct
     4201 tattattcta tatgccatct actattccac aaatgaactc tctacagcaa ggaaccacac
     4261 attgttggct gttagaatcc ccgcaggata tctgattttt ccttgataat ttctgaagaa
     4321 cctctgacat ttatactcta aacatttttc taaaccaagt tgatatatta tcttttaccc
     4381 attcttttaa ctcttccaac ttttctttgt tgaattcatt attgagattt tcattatgtt
     4441 cactccccaa aacagaaata ttatcctaaa atttatagag agaatgagag tattccaaaa
     4501 atactgaaga acacatttcc caaagttgta acattaaaat aatatgttct agaggagctc
     4561 accattattt tacaaatagt atttgcctgt tcccaagctt gtagaacatg ggacaggaag
     4621 aagccttaag accactatct gactggatgc tgtggttgta atttcaactg acagagactg
     4681 cacttttcta aattgcatgc tgtcccttat gagaagcatc cctgtgtgaa gtagcatttg
     4741 cctaactagt cagtgggaat ggcagtaagt gatggaccag gacacactgt tttgactgag
     4801 gagtgggtca gcaggatgat tgagtgtgaa ctcagtgttt cactgaattc tgaccaagct
     4861 gtggtttatt gttgcagaac ttcatttacc tcatgataaa aacatgggtt aatactacct
     4921 aataggatgg ctgtgaaagt tgggaaacat acagatgtac ctgacttaca gcatagatgt
     4981 tcaaacaagt agcagctttc tcaaacaacc atcaattcag caagttggtt actaaattga
     5041 gctcttaact cttctttccc ttaatattgc ataatcatta ttctgcacct aaatagacca
     5101 atgactactt ttctgtagag tcattgaaaa gggaatcttt gttccctctt acttatggga
     5161 gataaaatgt taacttccta atgaactctg agtttttaat gtggtgtttc tgaagaaaag
     5221 ctaattaaac atttagttgt atgtagccag agtctgagtc attttcacac acaactccat
     5281 atattgctgt ctccaaaatt aggagggcag tgtcaccaag ccacagacct ttgtagttgt
     5341 cagatataca ttgtgtttct gtggcattgg actaagaatg ttctcttctc tgcccccctt
     5401 gtttttcctt cccttggagg aaaagttgca caatatggtg tggaaaaaaa aagtctcctt
     5461 catggaaagg gagggaaaca ctccctttac aatctcagtc agcagattca ctctactgga
     5521 gaaaaaaaaa ggaaacaatt ttattggaag cagatgttga cactgcgtcg ttactgaaga
     5581 tagaaagagt tcactgagtc gttgcagtta caaaggggta ttgatggcac tcaaggtccc
     5641 tgtggtgggc caccttccca gctgtgggag gacagcagaa gctgtttgca acccaaaatg
     5701 aagtcagcct gtgatttcaa tgtgcaagaa acaccaagga ctaaacttgt ttgtttggtg
     5761 taattttttc ccctgcagaa tgcataatat ttatctttca tatatattaa ggctggaaag
     5821 aagaaactgg gaaagggaat aacactcgaa atgtatataa gaaatactca agttaataaa
     5881 aaaaaaagaa aaaaaatact ccaatttcag gaatccttta agtctaccat tatagcatga
     5941 aaacattgat taaaatgatt tcagaaaaat taggctgata tttgtctctc aaaatgtagc
     6001 tgaaca
//
