LOCUS       XM_039089294            3031 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus VGF nerve growth factor inducible
            (Vgf), transcript variant X5, mRNA.
ACCESSION   XM_039089294
VERSION     XM_039089294.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089294.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3031
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3031
                     /gene="Vgf"
                     /note="VGF nerve growth factor inducible; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 8 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     27 samples with support for all annotated introns"
                     /db_xref="GeneID:29461"
                     /db_xref="RGD:69399"
     CDS             556..2559
                     /gene="Vgf"
                     /codon_start=1
                     /product="neurosecretory protein VGF isoform X1"
                     /protein_id="XP_038945222.1"
                     /db_xref="GeneID:29461"
                     /db_xref="RGD:69399"
                     /translation="MTLGRGRQEALGTQNEDCERSLTICTTPEIATSFLFSAKRFSSV
                     SGSPLVMKTFTLPASVLFCFLLLIRGLGAAPPGRSDVYPPPLGSEHNGQVAEDAVSRP
                     KDDSVPEVRAARNSEPQDQGELFQGVDPRALAAVLLQALDRPASPPAVPAGSQQGTPE
                     EAAEALLTESVRSQTHSLPASEIQASAVAPPRPQTQDNDPEADDRSEELEALASLLQE
                     LRDFSPSNAKRQQETAAAETETRTHTLTRVNLESPGPERVWRASWGEFQARVPERAPL
                     PPSVPSQFQARMSENVPLPETHQFGEGVSSPKTHLGETLTPLSKAYQSLSAPFPKVRR
                     LEGSFLGGSEAGERLLQQGLAQVEAGRRQAEATRQAAAQEERLADLASDLLLQYLLQG
                     GARQRDLGGRGLQETQQERENEREEEAEQERRGGGEDEVGEEDEEAAEAEAEAEEAER
                     ARQNALLFAEEEDGEAGAEDKRSQEEAPGHRRKDAEGTEEGGEEDDDDEEMDPQTIDS
                     LIELSTKLHLPADDVVSIIEEVEEKRKRKKNAPPEPVPPPRAAPAPTHVRSPQPPPPA
                     PARDELPDWNEVLPPWDREEDEVFPPGPYHPFPNYIRPRTLQPPASSRRRHFHHALPP
                     ARHHPDLEAQARRAQEEADAEERRLQEQEELENYIEHVLLHRP"
ORIGIN      
        1 acgcgggcga ggcagcgcaa ggtggttctc gtccgtttca cagtagggac cccagtctcc
       61 ttatacaatc ccctctcatt gcgtctttgc acccctcccc atggctgacg gaataaatgg
      121 ctgcagagac ctcctaaagc ccttccatag ccctcatccc tggttttcca agccttgaac
      181 tccgcaatca ttgttctgcc gaacttcact ctccatctac tcctggaatg catgagagct
      241 tcagataccc ggaccaagag ctgatggggt ttcttctggg aaagtcaagc cactgatgga
      301 agggagaagc cactgctggt tctagagaga aagcaccggt ggcgcgggcg ctgtccagcg
      361 tgctgaagcc ggagcgagag cgctgttgct gacccagctg agcccagctc ctaggacgcc
      421 agccctcgac catctttcat actccagcca cggaacggag ccagggcaga cgggtccgga
      481 ttttccccct gccccgaccc tcctctccac ctcccgccgt cgtgacaccg gctgtacacg
      541 ggcgctggct gagagatgac tttgggaagg gggcgacagg aggcactggg tacccagaac
      601 gaggattgcg agcgttctct gaccatttgc acgaccccag agattgccac atctttcttg
      661 ttctctgcta aacgtttctc ttcggtctct ggcagcccgt tggtcatgaa aaccttcacg
      721 ttgccagcat ccgtcctctt ctgcttcctt ctactcatcc gggggttggg agcagcaccc
      781 cccgggcgct ccgatgttta tcctcctccc ctcggctctg agcataatgg gcaggtagct
      841 gaggacgcag tgtcccggcc aaaggatgac agcgtcccag aggtccgagc ggctcggaat
      901 tccgagcctc aggaccaggg agagctcttc cagggcgtgg atccccgggc gctggccgcg
      961 gtactgttgc aggcactgga ccgtccggcc tcgcccccgg ctgtcccggc aggttcccag
     1021 cagggaacac ccgaagaagc agcagaagct ctgctgaccg agtccgtgcg cagtcagacc
     1081 catagcctcc cggcatcaga aatccaagcg tccgctgtgg cgccccctcg ccctcagact
     1141 caggacaacg atcccgaggc agacgaccgc tcagaagagc tggaggcact agcatccttg
     1201 ctccaagaac ttcgagattt cagtccgagt aatgctaagc gccagcaaga gacggcggca
     1261 gcagagactg aaacccgcac gcacacgctg acccgagtca atctggagag ccccgggcca
     1321 gagcgcgtat ggcgcgcttc ctggggagag ttccaggcgc gcgtcccgga gcgtgctcct
     1381 ctgccgccct cggtcccttc tcaattccag gctcgaatgt ccgaaaacgt tccccttccc
     1441 gaaacccatc agttcgggga aggagtgtcc tcccctaaaa cacatcttgg tgagactttg
     1501 acacccttat ccaaggcgta ccaaagtcta agtgccccct tccccaaggt gcgtcggctc
     1561 gagggctcat tcctgggcgg ttccgaggca ggagagcgcc tgcttcaaca agggttagct
     1621 caggtagagg cagggaggag gcaggcggag gccacccggc aggccgcagc gcaagaagag
     1681 cggctggccg atctcgcctc cgacctgctg ctccagtatt tgctgcaggg cggcgcccgg
     1741 cagcgcgatc tcgggggtcg cgggctgcag gagacgcagc aagagcggga gaacgagagg
     1801 gaggaggagg cggagcagga gagacgcggt ggtggggagg acgaggtggg ggaagaggat
     1861 gaggaggcgg cagaggcgga ggcggaggca gaggaggcgg agagggcgcg gcagaacgcg
     1921 ctcctgttcg ccgaggagga ggacggggaa gccggagccg aggacaagcg ctcccaggag
     1981 gaggcgccag gccatcggcg gaaggatgct gaggggacag aggagggcgg ggaggaggat
     2041 gacgacgacg aagagatgga tccgcagacg atcgatagtc tcattgaact gtccaccaaa
     2101 ctccacctgc cagcagacga tgtggtcagc atcatcgaag aggtggagga gaaacggaag
     2161 cggaagaaga acgcccctcc cgagccggtg ccgcccccca gggctgcccc agccccgacc
     2221 catgtccgct ccccgcagcc cccacctccc gccccggccc gggatgagtt gccggactgg
     2281 aacgaagtac tcccaccctg ggatcgggag gaggatgagg tgtttccccc ggggccctat
     2341 caccccttcc caaactacat tcggccgcgg acactgcagc cgcccgcatc ctcccgccgc
     2401 cgtcacttcc atcacgcgtt gccacctgcg cgccaccatc ccgatctgga ggcccaggcc
     2461 aggcgcgcgc aggaggaagc ggacgcggag gagcgccggc tgcaggagca ggaggagctg
     2521 gagaattaca ttgagcacgt gctgctgcac cgcccgtgac ccgcccctgc gcgcccgctc
     2581 ccaactgcgc gcgccgccac gccccccctc cgtgtcgctc ctcctccctc tcggtgtttg
     2641 catgcgcccc ggctccgccc ctcggctgcc gcccggcccc gccccacaag gccccgcccc
     2701 gggttctgtc aggaccagac ctgtcagact tctttggggt ctgatcctgg ggccagccca
     2761 ggcgggtgtg tggtttgtgc gagtcccctt acacccccac ttcctccagg ggcctcgtcc
     2821 ccatctagtt tctctagcga cttcctggtc ccaaacgggg aaaagctgtt ctatttaatc
     2881 gtgtgaagtg tctgtctccc agccttgggg cccccggagc ctcccttctc caaattgctg
     2941 tgaacttacc cacatcttgc ccttctgttg taaatacccc tcacggagga aatagttttg
     3001 ctaagaaata aaagtgacta ttttattagg a
//
