LOCUS       XM_039078697            2684 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus vezatin, adherens junctions
            transmembrane protein (Vezt), transcript variant X5, mRNA.
ACCESSION   XM_039078697
VERSION     XM_039078697.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078697.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2684
                     /gene="Vezt"
                     /note="vezatin, adherens junctions transmembrane protein;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 18 ESTs, 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 110 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:299738"
                     /db_xref="RGD:1359117"
     CDS             353..2209
                     /gene="Vezt"
                     /codon_start=1
                     /product="vezatin isoform X4"
                     /protein_id="XP_038934625.1"
                     /db_xref="GeneID:299738"
                     /db_xref="RGD:1359117"
                     /translation="MDTFQHSAPWQPLTFGMSPCCLPSLVCSSCFPRGGLCLPGWVRL
                     EDMAANSRAFTNLVRKSLRLIQETEVISRGFTLVSAACSFNKAAQHPSQHLIGLRKAV
                     YRTVRANFQAARLATLYMLKNYPLNSESDNVTNYICVVPFKELGLGLSEDQISEEEAR
                     NLTDGFSLPALKVLFQLWVAQSSEFFRRLALLLSTANSPSGPLLTAALLPHRILSDVT
                     QGLPHAHTACLDELKRSYEFFRYFETQHQSVPQRLPKTQPKWRELNNVHTAVRSLQLH
                     LKALLNEVIILEDELEKLVCTKETQELLSEAYPVLEQRLKLIEPHVQASNSCWEEAIS
                     QVDRLLRRNTDQKGKPGVACENPHCTAAPLLRPTLHIEDRDPIPEEQELEAYVDGIDI
                     ESEFRKDSLYHVSQEDRERQKREQEESKRVLQELKSVLGFKASEAERQKWKQLLFSDH
                     AVLKSLSPVEPVESVSNSETPMNSDTEQAHSEATEEETSKPCASDKEDTRTEYMCDGP
                     PKGQSKDTSGDQGHLLQGAHQCESEAKPPQAAAAGATAPPTPRDSPRLSIKQRLARLQ
                     LSPEYTFTAGLAAEVAARSLSFTTMQEQTFGDEEDEDKEQLVEGGERELEEK"
ORIGIN      
        1 aattctccac tttaccagta cctacaggat ttgggacaca cagattttga aatatgttct
       61 tctttgtcac caaaaacaga aacatgcttg acaacagagg aacctcagac gcctcccacc
      121 agagtcctac agaaacaagg catcctgttg aaactgacag aaaccatcaa gagttggact
      181 ctttcctctc agtacagtaa gaaagatgac ttactccaca agctggacac cgggtttcga
      241 ctggacgcac tggacgccat cctgcaacag gaagtcctgc tccaagagga tgtggagctg
      301 attgagctgc ttgatcccag catcctgtct gcagggcacc cgcaacagga aaatggacac
      361 cttccaacac tctgctccct ggcaacccct aacatttggg atgtctccat gctgtttgcc
      421 ttcattagtc tgctcatcat gcttcccacg tggtggattg tgtcttcctg gctgggtccg
      481 tttggaagac atggcagcca atagccgagc cttcaccaac cttgtgagaa agtcgctccg
      541 tctcatccaa gaaaccgaag tcatttccag gggatttact ctggtcagtg ctgcttgctc
      601 atttaataag gctgcacagc atcccagcca gcatctcatc ggccttcgga aagccgtcta
      661 caggaccgta cgagccaact ttcaagccgc aaggctagct accctgtaca tgctgaaaaa
      721 ctaccccctg aactctgaga gtgacaatgt caccaactac atctgtgtgg taccttttaa
      781 ggagctgggg ctcggactca gtgaagacca gatatcagaa gaggaagccc ggaacctgac
      841 ggatggcttc agcctgccag ccttgaaggt tttgttccaa ctctgggtgg cacagagttc
      901 agagttcttc agacgcctag ctctgctact ttccacagca aattcgcctt ctgggccctt
      961 actgactgct gcactcttgc ctcatcgtat tctctctgat gtgactcaag gtctacctca
     1021 tgctcacact gcctgcttgg acgagctaaa gcgcagctat gagttctttc ggtactttga
     1081 aactcagcac cagtcagtcc ctcagcgctt acccaaaacc cagccgaagt ggagagagct
     1141 gaacaacgtc cacacggcag tgcgcagctt acagctccat ctgaaagcgc tgctgaatga
     1201 agtaataatt cttgaagatg aacttgagaa gctcgtttgt actaaagaaa cccaagagct
     1261 gctgtcagag gcttatccag tcctagagca gagattaaag ctaatcgagc cacatgttca
     1321 ggccagcaac agctgctggg aagaagccat ctcccaagtg gacagactgc tccggaggaa
     1381 tacagatcaa aaaggcaagc ctggagtagc gtgtgagaac ccacactgca ccgcggcgcc
     1441 cttgttgcgg ccgacgctac acattgagga cagagacccc atccctgagg agcaggaatt
     1501 agaagcttat gtggatggca tagacataga aagtgagttc cgaaaggaca gtttgtatca
     1561 cgtgtcgcag gaagacagag agagacagaa gcgtgagcag gaggagtcca agagggtgct
     1621 gcaggagcta aagtctgtgc tgggatttaa agcttcagag gccgaaaggc agaaatggaa
     1681 gcaacttctg ttcagtgacc acgctgtgtt gaaatccttg tctcctgtag agccagtgga
     1741 atctgtaagt aactcagaga cacccatgaa ttcagataca gaacaggccc atagcgaggc
     1801 tacagaagag gagactagta agccctgtgc gagcgacaag gaagacacta ggactgagta
     1861 tatgtgtgat ggccctccaa aggggcagag caaagacacc tctggagacc aaggccacct
     1921 cctccaagga gcccaccagt gtgagagcga ggccaagcct cctcaggctg ctgctgcagg
     1981 ggccaccgcc cctccaactc ccagggactc accccggctc tccattaagc agaggctggc
     2041 tcgactccag ttgtcaccag aatacacctt cactgctggc ctggctgcgg aagtggccgc
     2101 caggtctctg tcctttacca ccatgcagga acagactttt ggcgacgagg aggacgagga
     2161 caaagaacag ctagttgaag gaggtgaaag ggagctggag gaaaaataaa agccaagatg
     2221 aagtgattgt cttgattgtt ccttttacaa aagtgttcga gctgcaagac tggggaggga
     2281 aatgagtgcg tgtttactct ctagaaagct gcggcgtgaa gttacagggt gaatactgat
     2341 ttgaaaacct gacctgaaat gaatagattc ctgtctaggc agatctttta ggcataggag
     2401 agaaaggtaa gggcagttct atttgtggca aaactgataa tcttggcaaa tctttaagta
     2461 cttttttata agaaatgagt ttatcatttt ttgccaaaac tttgctgcca tgaggtaatg
     2521 aggatgagtc ttgcagagcc taaaccttta gaatgagccc tttctactgt gtccttgcgg
     2581 tgtgtaactg cagcggtcat gttaatacat tgttcgtatt ttattttgtt tataccgctc
     2641 ttaaaaaaga tacaggttct aaataaaata tttaattact acaa
//
