LOCUS       XM_008773378            1008 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus VENT homeobox (Ventx), mRNA.
ACCESSION   XM_008773378
VERSION     XM_008773378.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008773378.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008773378.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 27% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1008
                     /gene="Ventx"
                     /note="VENT homeobox; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 14%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:100361016"
                     /db_xref="RGD:2320944"
     CDS             1..1008
                     /gene="Ventx"
                     /codon_start=1
                     /product="homeobox protein ceh-37-like"
                     /protein_id="XP_008771600.2"
                     /db_xref="GeneID:100361016"
                     /db_xref="RGD:2320944"
                     /translation="MDTSSQLPQEPAWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNW
                     QESQGSSRESSIQMQPGPVMDPGLPTLRSPSGHPSHQRPSTPSSRSGFHVPIEPMALS
                     DKYGGKQTGPVAPRKRRKERTQYSAKQKSVLQEHFAECQYPDKKQCLELASLVRVTEK
                     EIKVWFKNNRAKCKQKNVPEALPEKNGGPEAVSGSTDFPGSIAVVGCDQGEPMATAIL
                     DVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDSNDPVTAGDSGVSAPVEAQADLA
                     AAGAPVAMAVDTQRPEECEDLPPLDEGVWQWMLEDFHQLEDWFTKNYIESPSSTSHPL
                     D"
ORIGIN      
        1 atggacacca gttctcaatt gcctcaagag ccagcatgga acttagcttt tcaaatgggc
       61 cagagtcccc ttgtgacctc aagaactcca atgcaatcaa gtccttcagt gcctgaacag
      121 aacctaaatt ggcaagagtc ccaagggtca tcaagagaat caagtatcca gatgcaacca
      181 ggtcctgtaa tggacccagg tttaccaact ctgagaagcc cctcagggca tccaagtcat
      241 cagagacctt caacaccctc atcgagatct ggtttccatg ttcccataga acctatggca
      301 ctgtcagata aatatggcgg taaacaaact ggccctgtag ctccaaggaa gcggcgaaag
      361 gaacgcactc agtactctgc aaaacaaaag tccgtgctgc aagaacattt tgctgagtgc
      421 cagtacccag acaagaaaca gtgtttggag ctggcatcct tggttcgtgt gacagagaag
      481 gagatcaagg tctggttcaa gaacaaccgg gctaagtgca aacagaagaa cgttccagaa
      541 gcactgccag agaaaaatgg aggccctgaa gctgtttctg ggtcaactga ttttcctggt
      601 tccatagctg ttgttggttg tgaccaggga gagcccatgg ccacagccat tctggatgtg
      661 gattccactc ccaaactgaa ctgcagccag gagtcttctc tggatggaaa ttggacctat
      721 gatggtgcca tgtgttgtct gccagaagac gtgcttgaca gtaatgaccc tgtcactgct
      781 ggagactctg gtgtatcagc accagttgaa gcccaggctg accttgcagc agctggagct
      841 ccagttgcca tggcagttga cacccaaagg ccagaggagt gtgaggattt acctccattg
      901 gacgaagggg tctggcaatg gatgcttgaa gactttcacc aattggaaga ctggtttacc
      961 aagaactaca ttgagagtcc tagcagtact tctcaccccc ttgactag
//
