LOCUS       NM_053574                752 bp    mRNA    linear   ROD 07-MAY-2024
DEFINITION  Rattus norvegicus von Ebners gland protein 2 (Vegp2), transcript
            variant 1, mRNA.
ACCESSION   NM_053574 XM_001078523
VERSION     NM_053574.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Pieragostino,D., Agnifili,L., Fasanella,V., D'Aguanno,S.,
            Mastropasqua,R., Di Ilio,C., Sacchetta,P., Urbani,A. and Del
            Boccio,P.
  TITLE     Shotgun proteomics reveals specific modulated protein patterns in
            tears of patients with primary open angle glaucoma naive to therapy
  JOURNAL   Mol Biosyst 9 (6), 1108-1116 (2013)
   PUBMED   23580065
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Kock,K., Ahlers,C. and Schmale,H.
  TITLE     Structural organization of the genes for rat von Ebner's gland
            proteins 1 and 2 reveals their close relationship to lipocalins
  JOURNAL   Eur J Biochem 221 (3), 905-916 (1994)
   PUBMED   7514123
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Nov 26, 2020 this sequence version replaced NM_053574.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X74806.1, AW920286.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, longest
                                      protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-140               JAXUCZ010000003.1  29919023-29919162   c
            141-277             JAXUCZ010000003.1  29918451-29918587   c
            278-348             JAXUCZ010000003.1  29917260-29917330   c
            349-459             JAXUCZ010000003.1  29916228-29916338   c
            460-561             JAXUCZ010000003.1  29915588-29915689   c
            562-588             JAXUCZ010000003.1  29915351-29915377   c
            589-752             JAXUCZ010000003.1  29914540-29914703   c
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..752
                     /gene="Vegp2"
                     /note="von Ebners gland protein 2"
                     /db_xref="GeneID:94106"
                     /db_xref="RGD:620384"
     exon            1..140
                     /gene="Vegp2"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..587
                     /gene="Vegp2"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; von Ebner gland protein 2; VEG protein 2; von
                     Ebner gland protein 2-like"
                     /codon_start=1
                     /product="von Ebner gland protein 2 isoform 1 precursor"
                     /protein_id="NP_446026.1"
                     /db_xref="GeneID:94106"
                     /db_xref="RGD:620384"
                     /translation="MKALLLTFSLSLLAALQAQAFPTTEENQDVSGTWYLKAAAWDKE
                     IPDKKFGSVSVTPMKIKTLEGGNLQVKFTVLISGRCQEMSTVLEKTDEPGKYTAYSGK
                     QVVYSIPSAVEDHYIFYYEGKIHRHHFQIAKLVGRNPEINQEALEDFQNAVRAGGLNP
                     DNIFIPKQSETCPLGSN"
     exon            141..277
                     /gene="Vegp2"
                     /inference="alignment:Splign:2.1.0"
     exon            278..348
                     /gene="Vegp2"
                     /inference="alignment:Splign:2.1.0"
     exon            349..459
                     /gene="Vegp2"
                     /inference="alignment:Splign:2.1.0"
     exon            460..561
                     /gene="Vegp2"
                     /inference="alignment:Splign:2.1.0"
     exon            562..588
                     /gene="Vegp2"
                     /inference="alignment:Splign:2.1.0"
     exon            589..752
                     /gene="Vegp2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcctcagtc tgccaagtga tctgctgttc acctgtgagc acagactctg gagatgaagg
       61 ccctgctcct gaccttcagc ctcagcctcc tggctgccct gcaggcccag gccttcccca
      121 ccacggaaga gaatcaggat gtgtcaggaa cgtggtattt gaaagctgca gcatgggaca
      181 aggagattcc tgacaagaag tttggatctg tgtctgtgac tcccatgaaa atcaagaccc
      241 tggaaggggg caacctgcaa gtgaagttca ctgtcctgat ttcaggacgg tgccaggaga
      301 tgagcactgt cctagagaag acagatgaac ctggcaaata cacagcctat agtggcaaac
      361 aggtagtcta cagcatacca tctgcagtgg aggaccacta tatcttctac tatgagggca
      421 aaatacacag acatcatttc caaattgcaa aactcgtggg cagaaaccct gagatcaacc
      481 aggaggccct ggaagatttt cagaatgctg taagagctgg aggcctcaac ccagacaaca
      541 tcttcatccc caagcagagt gaaacatgcc ctctaggaag caattaggga agtggtgcct
      601 tgttccagct tttccacacg gcattgctgc actctacaca gacccactgg gcacaggaca
      661 cagaagcagc tccttcactg tcccttctgg ctttgcccac ccctgccctc tgcctccctc
      721 ttccctgctt ctctataaag aacttcatca tc
//
