LOCUS       XM_039113221            1243 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus valosin containing protein lysine
            methyltransferase (Vcpkmt), transcript variant X1, mRNA.
ACCESSION   XM_039113221
VERSION     XM_039113221.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113221.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1243
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1243
                     /gene="Vcpkmt"
                     /note="valosin containing protein lysine
                     methyltransferase; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 4 ESTs, 15 long
                     SRA reads, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 232
                     samples with support for all annotated introns"
                     /db_xref="GeneID:102548559"
                     /db_xref="RGD:7565188"
     CDS             456..893
                     /gene="Vcpkmt"
                     /codon_start=1
                     /product="protein N-lysine methyltransferase METTL21D
                     isoform X1"
                     /protein_id="XP_038969149.1"
                     /db_xref="GeneID:102548559"
                     /db_xref="RGD:7565188"
                     /translation="MAATLGADVIVTDLEELQDLLKMNINMNKHLVTGSVQAKVLKWG
                     DDIEDLMSPDYILMADCIYYEESLEPLLKTLKDLSGSETSIICCYEQRTMGKNPEIEK
                     KYFELLQLDFDFEKIPLDKHDEEYRSEDIHILHIRKKNPKPPS"
ORIGIN      
        1 aagagctgat caaagtagca ggcagctggg ccactcccag gtagattctg cgggtttcta
       61 ccgccttccg ggctttgaga gtcacgcatg cgctttgaac aaccgctttg ccgctgggaa
      121 gtacgggtcc tgcgtgagcg tgacgtcagc acgtaccgca gcctgtggcg ggcaggagct
      181 ggaatatcgt ccgccgagga gcgggaatac cgtccgtcgt ggagccggag gtggaggatc
      241 cgctctggag ctttgtgcgg gttctggaga agcgagatgg gaccgcgctt cgactgcagc
      301 agtacggctc cggaggcgtg ggttgcgttg tgtgggacgc cgccatcgtc cttgccaaat
      361 acctggagac gccggggttt tctggcgatg gggcccacgc tctgagtcgg cgctcggtgc
      421 tggaactggg ttccggcacg ggggccgtgg ggctcatggc tgcgaccctc ggggcagatg
      481 ttatagtcac tgatcttgag gagctacaag acttgctgaa aatgaatatt aatatgaaca
      541 agcatcttgt gactggttct gttcaagcca aggtactgaa atggggtgat gacatagaag
      601 acttgatgtc accagactac atattaatgg cggactgcat atactatgag gagtccttgg
      661 aaccattgct gaaaacacta aaagatctca gcggatctga aacttctatt atatgttgtt
      721 acgaacaacg tacaatgggg aaaaatccag aaattgagaa gaaatatttt gagctcctgc
      781 agctagactt tgactttgaa aaaatccctt tggacaaaca tgatgaagaa taccgaagtg
      841 aagacattca tattctacac atcaggaaga aaaatccgaa accgccatca tgaagccctt
      901 ttccattacc cgtgccccca gcatcctggg taaggtaaag ctgtgaccac gcatgcacac
      961 cgcatggaag actgccttac agagttctcc agcatgtctt agagatctgg ctcctggatg
     1021 accactgcct tggactgccc acagtgtgaa atgcctgcct gcccgtgggc ctgaaatcta
     1081 acttaggttt acttagctca gcatcaagtt ctgtttaaaa gaaacattga caatcactca
     1141 aataaagatt aattttgagg acagcctcaa gtctgaagca gcatggttga ctcggtacat
     1201 tttcaagaaa cttagaaata aattgctcca atttctgatg gca
//
