LOCUS       XM_039089676            6034 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ventral anterior homeobox 1 (Vax1),
            transcript variant X1, mRNA.
ACCESSION   XM_039089676
VERSION     XM_039089676.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089676.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6034
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6034
                     /gene="Vax1"
                     /note="ventral anterior homeobox 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:64571"
                     /db_xref="RGD:621132"
     CDS             3553..4329
                     /gene="Vax1"
                     /codon_start=1
                     /product="ventral anterior homeobox 1 isoform X1"
                     /protein_id="XP_038945604.1"
                     /db_xref="GeneID:64571"
                     /db_xref="RGD:621132"
                     /translation="MLDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRC
                     QYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLR
                     LLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAATAPGP
                     AGAASQHPPAVGGAPGPGPAGPGGLHAGAPTASHGLFSLPVPSLLGSVASRLSSAPLT
                     MAGSLAGNLQELSARYLSSSAFEPYSRTNNKEGAEKKALD"
ORIGIN      
        1 acacacatgc acaccattac acacatacca tcacacacac acactatcac acacatcatc
       61 atcatcaaaa cacacacaca cacacacaca cacacacaca cacacacaca cgacttgtta
      121 attggtgaga aataagtata gactcaggaa caacccaaga ccatggaata ccttagtttc
      181 aggtttccag cctctgcttt aaaggataca tgttgtcata gtgggtggta gattctgatg
      241 ttagggctat ttggaactga cttaaatctc tattggagtc tcagcatggc actcacagaa
      301 aacattctgt agtgcagaag ggagctatcg gccacagcac agggaacatt acttatcaca
      361 tttccaacca gacttatctg agagagcaat cggaccacca ctccatgtaa aacaggtagt
      421 ctctacttcg gcaggcagcc agctgttccc aggctcagcc acagaatgtg agactggaga
      481 ccaggagaac agggaggacc ctcaggatca cccagcctcc cccagcaatg aagagtgaag
      541 gccacattgg atgggaacag gctgcttggc tgtttacacg tgtatgtgcg gaggacagag
      601 atctatagca tggtgtcttc tgctctcact ttccgctttt attttcttgg ggtggaatct
      661 ctaattgaac cgggagacag attggcagct agcaaaccca gcaatcatca tggtcttggg
      721 gttacggtgc atgtgtggcc acactgcttt tcacacaggt gctggggaat tgaactcagg
      781 atctcatgat tgcacaggaa gtgctcttat ccactgcgcc atctctctag ctcagtggtt
      841 ctcaaccttc ctagtgctgc agtcctttaa tacagttaat gtatattttc attgctactt
      901 tgtaactgta gttttgctat tatgtatcat aatgtagtta tttttagaga tagaagtttg
      961 caaaaggggc cctggcacac agattgagaa ctgctgcaat gtgtgtgtgt gtgtgtgtgt
     1021 gtgtgtgtgt gtgtgtataa atatatatat acatatacat atatatacat tcatgtatgt
     1081 ataatgtttt aattagttct ttgagaattg gatacatgca tataagctgt tctgaatgtc
     1141 acctcccatt tcacagccca ctgatcgtct ttccactccc acccaacttc acatcctctt
     1201 ttgctgttct gagggagcaa ggagtgtagc ttagttggtt gggtgcttac tatgtaagca
     1261 caagggtctg gatcccaccc ccagcactat ataaagtgtg caaggtagag ccaagaagac
     1321 ctgaatctca aggtcatcct cagctgagtt caagaccagc ccaggatact tgagatcgag
     1381 tctcaaaata aataagtaaa taaacaaacc aatggaaatg gggctggtga gatggcacca
     1441 atggtggtag tcatgccacc gagcctggca gcccaagttt tatcaccaga aatgacagca
     1501 gaaagagaga acttaacttc agaagttgtt ctctgaccct cacatgaata tgtggtttgc
     1561 ctgacttctc caaataaata aatgtaaatt tttaaatgaa taaacatttt atttttaagt
     1621 attgatttgt gtgtgtgtgt ctttgtgtgt gtgtgtgtgt gtgtgtgtat gcacacagag
     1681 gtcagaaaag ggtattggat ggatctctta gggatggagc tacagaaagt tgtgatctgc
     1741 catttgggtg ccaggggaat caatcctgga tcctctggaa gagtctgtgc tcttaaccac
     1801 tcagctatct ctccagcccc aaattaacat ttcgaagggg acaaaaagaa tgtgtagtaa
     1861 atagctgggc ccaggagaca aaagcctata aatcttagct gttaaggagg ctgaggaaag
     1921 aggattggaa gttgaatgcc tgcctaggaa agttggtgtc tcaaaataaa acagtaaaga
     1981 ctgatgggtg catcttgttg gtgaagtgct ggtttagcaa acttgaggcc cctcaactat
     2041 ggagggtggg aactaagttg ttgaagggat ttatggcaga gtctcaactg agctgtgggt
     2101 atttttttaa aacactgtgt atcaaggatg tcatgctctg aaccagatgt ttggtgtctg
     2161 gtggatgccc cgggagaggc atttatagtc aagatgctgg gagaatctga ctgactcatg
     2221 aggtggcctc ctgatccttc ctgattccag ggtttagaaa agcctgtgga cagggaatca
     2281 cagcaggctg ctgtagagag actctccaag gtccttgcag ctcagccttg gtcttcagtg
     2341 gtccatactg tggaggggtg tgaatgtctc catccacagt gtctgcagac atcaagccac
     2401 acttaaatac ttaatccttc acaaacgctg tttctgttcc tatctactcc tcttcaggaa
     2461 cattatacct taattttatt gttttttttt tcttcagaaa gttcagatta aaggggctca
     2521 attttgcttt gagaagccac gctggtttaa ttagtctacg tttacaaagc atttttcttt
     2581 gctttaaaag agggagtgtg atgtgaagaa gaacacagcg caccaaaaca tccccaggcc
     2641 cctccccttt attcgctgga ccttcattcc atggagacta gttttgcctt gttttttggt
     2701 cacagggggc cacgggtcac ttccagtcct tggtggctgt agggcccaaa ccctccattt
     2761 cttttacagg tgagcatctc tagaaaactc caaacaatct tgtctctcac gaataactgg
     2821 gagtcttccc atttcctttt cttcccgatg caaatagaag tacccataat gcattaggct
     2881 cccataatgc tttaggctcg ctcttccttc cactccactt tactgtcctt cattcttttg
     2941 gtctgtctta caaaacagaa aatagctggg gacaaaaacc gtctcaccct cagttctgta
     3001 gctccaggcc acagatctct cctctccgcg tgtcaaagga aggacgtcct ctagtgtatt
     3061 ctgcatccac gctggcgcag tttgggcatc tacagcgaca ttacagctga atggagtgag
     3121 ctgtatagaa agagactcta ggtgaggagc tgtcctcgct tcaccctttt gacacgggac
     3181 ctctctgtgg ccctaggatc caggagcctt tcatgcagaa gctgttacta tctactgagt
     3241 aaacaaccca gctgttttcc agcccgtaag aatactcacc tggagaattt caaggagcca
     3301 aatgaccacc tgctgtcact tcccatttgc tgttagactg tctctaatct cttaaaggtt
     3361 gccagcagtt cagttcagta acatcagaat accaaacaca gaccagcaac ggtggcataa
     3421 tccagcagaa accattaggc caccactgag tcaacattag tcagcaggag tggccagctg
     3481 tgataccagg agaaattctc tgccatgcct ctctcaatga agtgaagatc agtaaagaca
     3541 ggagacattg caatgctaga tgccaagggg tctatccgag aaatcatcct gcccaagggc
     3601 ttggacctgg accggcccaa gaggacacgc acgtccttca ccgcggagca gctctacaga
     3661 ctggagatgg agttccagcg ttgccaatat gtagtgggcc gggagagaac cgagctggct
     3721 cggcagctca atctttctga aacccaggtg aaggtctggt tccagaatcg gcggaccaag
     3781 cagaagaagg accagggtaa agactcggag ctgcgctcgg tggtgtcgga gaccgccgcc
     3841 acgtgcagcg tgctgcggct gttggagcaa ggccgcctgt tgtcgcctcc cgggctgccc
     3901 gccttgctgc cgccctgtgc tacaggcgct ctgggctccg cgttgcgcgg gcccagcctc
     3961 ccggccctgg gtgcaggcgc tgctgcgggc tccgccgctg ctgccgccgc cgccgccact
     4021 gccccgggtc cggccggcgc ggcgtcccag catccgccag ccgtgggcgg cgctcccggc
     4081 cccgggcctg cagggcccgg gggactgcac gcgggagctc cgacagccag ccacggtctc
     4141 ttcagcctgc cggtgccgtc gctgctaggc tctgtcgcca gccgcctgtc ctccgccccg
     4201 ttgacgatgg ctggttcgct agccgggaat ttgcaagaac tctcagcccg ttacctgagc
     4261 tcctcggcct tcgagcctta ctcccggacc aacaataaag aaggggccga gaaaaaagcg
     4321 ctggactgat tttaagtgtt accctgtatt tatatttata acatctcttg tggtggtatt
     4381 tatggactcg cgcgcgttag gcgcccagtg ctcttgcact ggccttcctg gcccccacca
     4441 agcctctgac tgcgcccctg gccctcaccc caccccggca cagactattg gtttcaactc
     4501 actcgggctg ttttgttctt tctacttttc ctcccttcct ccaaccccgg tttctttctg
     4561 aatccaggaa tgatccaaag aattagggag aaatacccga attagccaac ccccaccctg
     4621 ctagccaggg aaggaacaga ctgagcctaa gtccaggccc ccacacctgc tctggatagg
     4681 ggcgctgcac agtgctccta tgaatattcg aaagaggaac tatgttcgca gggcgccagg
     4741 gactgaaaag gcttcttggg tttttttttt tagaccccaa aagaagggcc tatcccctat
     4801 tgtcagagaa atcagggctt tgggagagtt cctggtcccg atttttagac ctctcaggat
     4861 aattggtgca tactcagctc ctgtccagaa cagagctgat gagttttatt tcttttagga
     4921 aaactatcac aggcgccccg accctgagaa acgatccagc agacgtcctg ttagacaaag
     4981 gtggtgataa atttgatcca gcagcaataa agcaaaagtc attgctacat aaaaccggat
     5041 gaagtgttac ctgtttttaa acacttaaac agttgagttt gaaagatgta cgaaattcgg
     5101 actagagaac gcaccatgga acgtgcgaaa ttaaaatcct gagcgctgtg actttagata
     5161 ggaatttaaa gaggaaacgg aaggaaaagc caatgacaga agcttgagaa tcttcttttc
     5221 agggcggtgg cccacggctt cctgctcctc ccaggagagt gcgcggtggc tagtgtcagt
     5281 ctcctgtcat gggaacttct ttttagaggc tcccagaagc aaagctacag aataacgggg
     5341 gggttggaac taaatcaaca cccattatat ttgcttcatc ttctaaactc cgatatctac
     5401 aaaaggcttt tcaccaagca ggaagggccg ggattttttg atcagctgct ttctgaagga
     5461 caggttgggt gcccggcttg gccttcaccg gtcctagttt cttggtgcca gtggttcctt
     5521 gtatggctgg cagtacaagc acttcctctc ccttctcaac cctagggtgt cagacatccg
     5581 atcccgagtt acaacccttt ccaccacgca ggtgcagccc cagccctcgc agcaacctta
     5641 gcccccagag ccatcgccac tcgcatttta accaaaacca caggcccaga gagcgaggtg
     5701 cctccgtgtc tagaatgtat tcacccatct gaaacaagcg caaaacattc taaagaacaa
     5761 agtaacttta ttgtaaatta tttacatccg aagtttttca tcttttttcc cattttcttt
     5821 cttgtttcgt tttctcctct ctctctctct ctctctctct ctctctctct ctctctctcg
     5881 gcaaataacg aagaaaataa cgaacgaacg attcaaacgc gggtaggtgt cactaaatcc
     5941 tggctactaa ttgtgttccg gacgtcttgg ctctttggat gtttttgtat ttatgtggtg
     6001 agagtgaaat atatatatct atgatgataa agtg
//
