LOCUS       NM_001400980            3761 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus vesicle amine transport 1-like (Vat1l), mRNA.
ACCESSION   NM_001400980 XM_003751883
VERSION     NM_001400980.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Jan 31, 2022 this sequence version replaced XM_003751883.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ211768.1, SRR26643291.41972.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-332               JAXUCZ010000019.1  59103636-59103967
            333-462             JAXUCZ010000019.1  59130468-59130597
            463-678             JAXUCZ010000019.1  59136685-59136900
            679-821             JAXUCZ010000019.1  59173677-59173819
            822-925             JAXUCZ010000019.1  59185853-59185956
            926-981             JAXUCZ010000019.1  59187967-59188022
            982-1176            JAXUCZ010000019.1  59192591-59192785
            1177-1260           JAXUCZ010000019.1  59268703-59268786
            1261-3761           JAXUCZ010000019.1  59270450-59272950
FEATURES             Location/Qualifiers
     source          1..3761
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..3761
                     /gene="Vat1l"
                     /note="vesicle amine transport 1-like"
                     /db_xref="GeneID:361414"
                     /db_xref="RGD:1598315"
     exon            1..332
                     /gene="Vat1l"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..1359
                     /gene="Vat1l"
                     /note="vesicle amine transport protein 1 homolog (T.
                     californica)-like"
                     /codon_start=1
                     /product="synaptic vesicle membrane protein VAT-1
                     homolog-like"
                     /protein_id="NP_001387909.1"
                     /db_xref="GeneID:361414"
                     /db_xref="RGD:1598315"
                     /translation="MAKEGVEKAEETEQMIEKETSKEPAEGGDGSHRLGDAQEMRAVV
                     LAGFGGLNKLRLSRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGF
                     ECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFP
                     MNFVTAYTMLFEIANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEA
                     IKDSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSS
                     NMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRSGLIRGVVE
                     KLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRGNIGKLILDVEKTPTPLMANDSTE
                     TSEAGEEEEDHEGDSENKERMPFIQ"
     exon            333..462
                     /gene="Vat1l"
                     /inference="alignment:Splign:2.1.0"
     exon            463..678
                     /gene="Vat1l"
                     /inference="alignment:Splign:2.1.0"
     exon            679..821
                     /gene="Vat1l"
                     /inference="alignment:Splign:2.1.0"
     exon            822..925
                     /gene="Vat1l"
                     /inference="alignment:Splign:2.1.0"
     exon            926..981
                     /gene="Vat1l"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1176
                     /gene="Vat1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1177..1260
                     /gene="Vat1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1261..3761
                     /gene="Vat1l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attgcactga agagcatccc acattcaaca ggaggaaccc gcgggagagc agcctcgacc
       61 cccttcacaa ccacagcctg tgcaccccgc agcacctcgc gcaccatggc caaggaaggc
      121 gtggagaaag cggaggagac cgaacagatg atcgagaagg agaccagcaa ggagcctgct
      181 gagggcggcg acggctccca ccgcctcggg gatgcccagg agatgcgagc tgtggtgctg
      241 gccggcttcg gcgggctcaa caagctgagg ctctccagaa aggccatgcc ggagccacag
      301 gacggcgagc tcaagatccg cgtcaaagcc tgtggcttga acttcattga cctgatggtg
      361 cgacagggga acattgacaa ccctcctaag acacccttgg tgccaggatt cgaatgttcc
      421 ggcattgttg aagctctggg ggacagcgtg aaaggatacg agattggaga ccgtgttatg
      481 gcatttgtca actacaatgc ctgggctgag gtggtctgca ctccagtgga gtttgtctac
      541 aagatcccag atgacatgag tttctctgag gccgctgcct tccccatgaa ctttgtcacc
      601 gcctacacga tgctctttga gattgccaac ctccgtgaag ggatgtctgt gctcgttcac
      661 tcagctggcg gtggggtggg tcaagctgtg gctcagctgt gttccaccgt ccccaatgtg
      721 accgtctttg gaacagcctc tactttcaag catgaggcca tcaaagattc tgtgacccac
      781 ctctttgaca ggaatgctga ctacgtgcaa gaagtaaaga ggatctcagc tgaaggtgtg
      841 gacatcgttt tggattgcct ttgtggggac aacactggca aggggctcag tctcctcaaa
      901 cctctgggga cctacattct atatggttca tccaacatgg taactggaga gaccaagagt
      961 ttctttagtt ttgcaaagtc atggtggcag gtggagaaag tgaaccccat caagctgtat
     1021 gaagaaaaca aagtcatcgc gggattctcg ctcctcaacc tgctcttcaa gcagggccgc
     1081 tcgggcctca tccgaggagt agtggagaag ctcataggac tgtacaacca gaagaagatc
     1141 aagcctgtgg tggattcttt atgggccctg gaggaggtaa aggaggccat gcagcgcatt
     1201 cacgaccgag ggaacatcgg gaagttaatt ctggatgtgg aaaagacccc aactcctctg
     1261 atggccaatg acagcacaga gaccagcgag gcaggagagg aagaagagga ccatgaaggg
     1321 gacagcgaga acaaagagag gatgcccttc atccagtaag ccagacctcg catccaagaa
     1381 ggtggaggat ggctaggaag aagatggccg ccaggagacc tcttctgtgc cccagtgaac
     1441 aaatgctgta gtccagtgtg tgtcgtgttt gtctgcagtc agccaagcta agaagctgtt
     1501 gatcactgtt gtgtttggaa ttaagtgcca atcccactcc atgcagtatt gtgtcccttt
     1561 ctggtctatg tatcacgctc tcccttgaag caaaccgatc cttcttcggg tccttccttg
     1621 atggttctag aatagcattg caaactatta ctagccctca gggcccgatg tcagaaacca
     1681 ggctactttt gattgaaagg tgttgtcaca gagccctgtt cagatcccac tattcttcag
     1741 gccaatgaca ctctttgcct gccagcaatc agctatgcct ccaattatgg cgcttagcag
     1801 tttagctagt ggcaagagag taggccagga gtattcacag tcccatacat tcagaattct
     1861 ccaagcagta ctttgtcact ttccccctta aatgctacat ccctgcatgt gtctctgcac
     1921 cttaaggtct gagtctctct ttaaccctct tccctggttc ttatttatat acccagggag
     1981 gtggatgtgg gttctttcct ggatagagat gggtggacag catctatctg aggaccagct
     2041 acagagacct ctcctctgaa accatatctc atgagcaaag tccttcctgt gcccacacat
     2101 gatgtattga aatcctaaga aaaacttgcc aaattgtagg cttaactcaa atgtcattga
     2161 acgcacctgg gttcttttac tctcggcctt tgaattactg cctactattt tttaagttcc
     2221 tacccaggga gcacctttcc caaggaagca ctcttttgaa gaccatattt gggggttgaa
     2281 agtccattgg tttctcttgc ctattcaaag cactttctaa cgtgtaaccc gcacgaggga
     2341 tacaggtggt ggcttcccag cgcttgatgc caagtgtgtg gtcctcctct ctgacacacg
     2401 aaaccatggt gctgatttga agctttagaa atcagggacc aaactgcttg atcaaatacc
     2461 ctgttcaatt tttccagctt gaaagaaaca ttctggtcct ttctaatagg ttttgaagtg
     2521 acatcagtta ccatagagga agaagacatc tccctccctt tgaagtgggg ctccttattg
     2581 ccttccccag cccttctgtc ctaagaggtt acacgtccgt cactcacaaa ccaagcttga
     2641 tataaaaagg agcccatgca atttagcacc ctgaacttgt cttctggaag acctaagtgg
     2701 gctcccatga ccttgggttg gtattctaaa tttataaaca tccttgaaaa cttaggaggg
     2761 ctctggtgtt gcccactttt tccacttaat gctttaagtt gggcaccatt ttttttgtgt
     2821 gggctgggag ggaacatggc tccacaattc cctgcttggt ttgcaaagtc tctgtagcca
     2881 gtctcccgcc attcgtcctg ttcctttatc tccatcctga tttttgtgat gatgacttct
     2941 tcaatgccaa atatttacct gaagggagtc tttcctcact gtgactggga aagtcaaata
     3001 tgaagatgag aaaaggagct gccagccagt aagccaaggg gtgagcctat gggaaagagt
     3061 gccaatcaca gattcttaat tcctacccct ggggagagat gctgtcgaga gaggtgataa
     3121 cctgttgcta aataccacat aatcagtcac atttccacca taaccatgct caagggtggg
     3181 tagacctgag gaccacactc ttgagtgcta ttactagtat gtaggaatag ccttttggaa
     3241 aggctaagag ttgtgttagg aaggttcacc ttcaggggac acggaacctg acccacattc
     3301 agaatccaga tggtgttgtc gtatacctaa gaatcatggg aagtcatctc tccccaaacc
     3361 tgttccgttt gtttcgttaa accatagatc acacatgaaa aaccgctccc tctcctgaga
     3421 gaatacagaa agagaacatt ggagcatgag cagcatcacc atgaagaaca ggagggtggg
     3481 tgggtgggtg ggtgggtgag gaacaactgg aatcagtcag ttgtcctgtg gaccttcctt
     3541 ccccccttgt gatcgtttcc tggaggaagt gtaaaaaaag tattgtctgt ttgccttaag
     3601 ggagcttcga aagcttcttg gaaggttgag ttttactaga atgaaccaaa catcgtctaa
     3661 tgtgtctgtg gcttcagagc tttcgttata ttgttatatt gtgcctataa agcaaattat
     3721 gtttacataa aaatataaat aaagtattca gcatagcata a
//
