LOCUS       XM_039081738            2179 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus vasodilator-stimulated phosphoprotein
            (Vasp), transcript variant X4, mRNA.
ACCESSION   XM_039081738
VERSION     XM_039081738.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081738.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2179
                     /gene="Vasp"
                     /note="vasodilator-stimulated phosphoprotein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 32 ESTs, 2 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 90 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361517"
                     /db_xref="RGD:1311542"
     CDS             250..1383
                     /gene="Vasp"
                     /codon_start=1
                     /product="vasodilator-stimulated phosphoprotein isoform
                     X3"
                     /protein_id="XP_038937666.1"
                     /db_xref="GeneID:361517"
                     /db_xref="RGD:1311542"
                     /translation="MNCNETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNP
                     TANSFRVVGRKLQPDQQVVINCAIIRGVKYNQATPIFHQWRDARQVWGLNFGSKEDAA
                     QFAIGMANALEALEGGGPPPAPAPPAWSTQNGPSPEELEQQKRQPEHLERRVSNAGGP
                     PAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVSGAGHGTGVAPPPAPPLPTAQGPSSGG
                     SGAPGLAAAIAGAKLRKVSKQEEASGGPLAPKAENSRGTGGGLMEEMNAMLARRRKAT
                     QVGEKPPKDESASEESEARIPAQSEPVRRPWEKNSTTLPRMKSSSSVTTSEAHPSVPS
                     SSDDSDLERVKQELVEEVRKELQKMKEEIIEVFVQELRKRGSP"
ORIGIN      
        1 cccagctcgt tcggggctgg atttagggga cacagcgctt tgagcgtccc agatctgggc
       61 cgatgtctct tggagcgatc tctaaatatc gacaccccgt ttctccacac tactccctaa
      121 aggcttgggg cggtgccggc tgaggttctc ttgatggctt tcaggtttag gggcgctctc
      181 gggactcaga atttgaagac ttttgggggg agcacctccg agttcgcaga taagtagaac
      241 gtcgcaggga tgaactgcaa cgagacggtc atttgttcca gccgggctac tgtgatgctt
      301 tacgatgaca gcaacaaacg atggcttcct gctggcaccg gtccccaggc ctttagccgc
      361 gtccagatct accacaaccc cactgctaac tctttccgag ttgttggccg caagctgcag
      421 cctgaccagc aggtggttat caactgtgcc atcattcgag gtgtcaagta caatcaggcc
      481 actcccatat tccaccagtg gcgtgatgcc cgccaggtct ggggcctcaa cttcggcagc
      541 aaggaggacg ctgcgcagtt tgcgatcggc atggccaatg ccctggaggc cttggaagga
      601 ggtgggcctc cccctgcccc agcaccccct gcctggtcta cccagaatgg cccctcccca
      661 gaggagctgg aacaacagaa aaggcagcct gaacatttgg agcgccgggt ctccaatgca
      721 ggaggcccac ctgctccccc agctgggggc ccacctccac ctccaggacc tccccctcct
      781 ccgggtcccc ccccaccccc aggtctgccc ccctcagggg tatctggggc aggtcatgga
      841 acaggtgtag ccccaccccc tgcaccccca ctccctacag cacagggccc cagtagtggg
      901 ggttccgggg ccccaggcct ggccgctgcc attgctggag ccaaactcag gaaagtgagc
      961 aagcaggagg aggcctctgg ggggcccctg gcccccaaag ctgagaatag tcgaggcact
     1021 ggtggggggc ttatggaaga gatgaacgcc atgctggccc ggagaaggaa agccacacag
     1081 gttggggaga agccccccaa agacgagtca gccagtgagg agtcagaggc ccgaatccct
     1141 gcccaaagtg aacctgtgcg aagaccctgg gagaagaaca gcacaacctt gccaaggatg
     1201 aagtcatcct cttctgtgac tacctccgag gcccacccct ctgtgcccag ctccagtgat
     1261 gactccgact tggagagggt gaagcaggag cttgtggaag aggtgcggaa ggagctacag
     1321 aaaatgaaag aggaaataat cgaagtcttt gtccaggagc tgaggaagcg gggttctcct
     1381 tgactacagg gacccagaag acccatttct tctttttgta cttcctgcct ggcacctgct
     1441 ttccctgcct caacttgacc aagagttaca caagaatgcg ttctccccta ccagctccca
     1501 cttggaagat tccacagggg tgtggcttcc tggtgccgtg gtcacaccca cgctggctgc
     1561 tgattggata aggaggtccc acccctttgt tccctttggt ccttcccctt caccatcccc
     1621 ttggagctgg ttcctctgct ggggatgtaa gagtaacccc acagtaaggg aaggaaggag
     1681 gggatctcac cttctcttgt tctggattca ctttaacgct ttaatgcctt ggaatttttt
     1741 tttttaagaa aaagtatata tatatatttg ggttttgtgg ggggaaggga aattttttgt
     1801 tctctttggt tttgataaaa tggggtgtgg gagtttttaa atgctatacc ccaagctttg
     1861 tcccatcaga ggcagctatg taagaggagg ggtatcccac caagtagggg gcatttcccc
     1921 cacccctggg atacctcccc atttgccttg gctcctctct cttttctata aggaattaag
     1981 attctttaac ttttttggaa cctcagtttt gtggtttttt ttatttgggt taggatttca
     2041 gggtccagac catttttgcc ctccaggaag acgaagtgag ggggaggaga agaggaaaaa
     2101 taggtcctcc gacttctaca ccatagcttc ttggacacgg gccctcgctg aataaatctg
     2161 cagtttttat aaatgcaaa
//
