LOCUS       XM_578575               4941 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus vasohibin 1 (Vash1), mRNA.
ACCESSION   XM_578575
VERSION     XM_578575.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 16, 2024 this sequence was replaced by
            NM_001427235.1.
            
            On Jan 21, 2021 this sequence version replaced XM_578575.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4941
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4941
                     /gene="Vash1"
                     /note="vasohibin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 30 ESTs, 1 long SRA read,
                     8 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 227 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:503052"
                     /db_xref="RGD:1564082"
     CDS             37..1179
                     /gene="Vash1"
                     /codon_start=1
                     /product="tubulinyl-Tyr carboxypeptidase 1"
                     /protein_id="XP_578575.2"
                     /db_xref="GeneID:503052"
                     /db_xref="RGD:1564082"
                     /translation="MPGGKKVVPSGSSGASLNAATAATTAAAAAATAAAAAAAHSGIT
                     CLETTEGASAQRDEEPEEEGDEDLRDGGVPFFINRGGLPVDEATWERMWKHVAKIHPD
                     GEKVALRIRGATDLPKIPIPSVPTFQPTTPIPERLEAVQRYIRELQYNHTGTQFFEIK
                     KSRPLTGLMDLAKEMTKEALPIKCLEAVILGIYLTNSMPTLERFPISFKTYFSGNYFR
                     HIVLGVNFGGRYGALGMSRREDLMYKPPAFRTLSELVLDYEAAYGRCWHVLKKVKLGQ
                     CVSHDPHSVEQIEWKHSVLDVERLGREDFRKELERHARDMRLKIGKGTGPPSPTKDRK
                     KDVSSPQRAQSSPHRRNSRSERRPSGEKKPAEPKAMPDLSGYQIRV"
ORIGIN      
        1 cctgatcatc ctcccacccc cgttgaggat ttagggatgc cagggggaaa gaaggtggtc
       61 ccaagtggca gcagcggtgc ctccctgaac gcagccacag ccgccaccac cgctgctgct
      121 gccgccgcca ctgctgctgc tgctgccgct gcccactctg gcattacatg tttggagacc
      181 accgaagggg cctctgcaca gagagacgag gagcccgaag aggaagggga cgaggaccta
      241 cgagatggag gtgtcccttt tttcatcaac cgaggtggac tgccagtgga cgaggccacc
      301 tgggaaagga tgtggaagca tgtggccaag atccacccag atggagagaa ggtggccctg
      361 cggatccgtg gggctaccga cctgcccaag attcccatac caagtgtgcc tactttccag
      421 ccgacaacgc ccatccctga gcgcctggaa gccgtgcagc gctacatcag ggagctgcag
      481 tacaatcaca cagggacaca gttctttgaa attaagaaga gcagacctct gacagggctg
      541 atggatctgg ccaaggaaat gaccaaagag gctctgccaa tcaaatgcct ggaagctgtg
      601 atcctgggaa tttacctcac caacagcatg cccaccctgg aacgcttccc catcagcttc
      661 aagacctatt tctcagggaa ctacttccgc cacattgtgc tgggggtgaa ctttgggggc
      721 cgctacggag ccctgggcat gagccgaaga gaggacctga tgtacaaacc gccagccttc
      781 cgcacgctca gtgagctcgt gctggactat gaggcggcct atggccgctg ctggcatgtg
      841 ctgaagaagg taaagctggg ccagtgtgta tcccacgacc cccacagtgt ggaacagatt
      901 gaatggaagc actcagtgct ggatgtggag cggctggggc gggaagactt ccgcaaggag
      961 ctggagcgtc atgctcgaga catgcgtctc aagattggca aggggacagg ccctccctct
     1021 cccaccaagg accggaagaa ggatgtttcc tccccacaga gggcccagtc cagccctcat
     1081 cgcaggaaca gccgcagtga gagacggcct tcaggggaga agaagcctgc agagcccaaa
     1141 gccatgccag acctcagtgg ataccagatc cgggtgtgag gcagatgcca gcacccccag
     1201 gcctcctcag cttctggagg cccagactca cctgcacgaa agaacctact tcattcaggc
     1261 aggggctggt gatgaggtgg acttggggtg ggaggcaagg aggaggcctt gccgttcagc
     1321 cccaagtgac ttcctatccc atgaagtcaa gcccctaact ttgagccaag aaacagtatt
     1381 ttatttggag ttttagctct acaactggtt taaggtattt gaagggaaag acaaatggat
     1441 atgttggtag ctgccagggt ctgctctctt gcgcgtgctc gttctctctc tctctctctc
     1501 tctctctctc tctctctctc tctctctctc tctctctctc tctctcagca ctgcatggct
     1561 tggggaggag ggctgcctgt ttctgtggtg ctcctctcaa cagcgatcag gatttgtgag
     1621 cctcaccagc cagtggggta agggtggggt ggtgcaggaa tggcggtgtt ttctccagcc
     1681 gggcctgtcc tggcagaatc atgacccaag gaaagggaag cagggtagca gttctagttt
     1741 tcaaatcagg aacttggcag aacccacatc tgcctaaggt ggaagcctat agcctaggag
     1801 agccctttag acagcactgt gtcccccaac gtcccctccc cacatcctca ccatggccag
     1861 tttgggatta ggctttagga gaaccaggag aggaccatgg cgggaagagt tctggtcact
     1921 agcacatctg ctggttctgt ccagtcttga ctattgctgc agcccagggg ctccctgcag
     1981 aaggctgggc tttgtagaga gccagacttg tactggggac accatgacct taaacttggc
     2041 tgggcacagg gtagttgagt ggaatcctct agttgtgtgg gaatgggctc ttccctcccc
     2101 ttctaataat ctcagcactt gctggagaaa caggaccaga ccaggctgca aacccccagg
     2161 gcaccttccc tgccttggct gcctgtttag gcttggagta gcggcagttt tagcagcgga
     2221 caggaggaag cccaggcaat aggagttgtc tgtcctctgg ccctggggca caagatccct
     2281 ggtaggaaag tgaggtatgg agagaggttg tctgggctgg gggaggagag ccagtccttg
     2341 agttgggagt gtaagtgaga agggcagagg gaggcagttc aggatggggc tgcgtgggga
     2401 ctatgtggga acaagttccc tgcagcacgg gtggcacttg tcaagttgct ggaggcttca
     2461 agtgacagag ggcagctgga ggaggtgacc gttaaggggc tttactgaga aggtggagtc
     2521 agcctgggcg gctgccagta aggctgcaga gggctgaggg ctggcttgga gccagaaacc
     2581 tagggactca aatgcctaca gggccagcag gtgacaaaga ggagggctgg gtggggaccg
     2641 tgtcccacca aagagagcat atcccattaa aagtgggatg ctaccattgt actgttccac
     2701 agtgcaggcc ctaaggggtg ttggcttttt ctctctcttt aggacagggc tctgaattaa
     2761 tacattgtaa tttttaagtt atcagttcaa gaaatgatca ccagagctga gagagtacca
     2821 gtctgcaatc tccagggtag agagcacagg ctggttgcgg gaagactcct gctgtactgt
     2881 gggtggaaaa tgtgaaagtt taaattttcc caaaggcaga aagggccact tcctgtgtct
     2941 ccctcctggc cccatcctgc atgcagaggc cgtgtttgtg cttactgggt cactggagcg
     3001 ggtagagtgg gatagaattg tgaaactctt gcctgccctg aaatggatgg tggctggaat
     3061 gaggaggggg agggatgccc tcgctggtga catgtgtggt tgctcatcaa catccatagc
     3121 cctgggccca gagccaggcc cactggggcc cacacagaca ccatgggagg ctggttgttc
     3181 atcagtccct tgttttgctt ggttcctcct ggggtcaggg ggcccttgaa aagtgtatag
     3241 ccttctccta ggctacaccc ctggccagac ccatggaagg gacgtgacac tatttgatcc
     3301 atctcagagt tcagggagta gggatggtgg tcccagtagc tcccacactt gtaccttgag
     3361 aggaggtgca agactggaca agatcttttt tagatctgaa tgcagttgct tctccttggg
     3421 acagcaaccc tatatgtctc tgggaactcc aagatatgac aagatatggg agaaaggtgt
     3481 gaggagagct ggagtcaggt gtatttagag agcagctcca ggtcccagag ccttaggaca
     3541 ggagctctga gctccagttc ctttgaggcc caggaaagaa gcaggtggag ccctgacgtg
     3601 ttcaggatat tagggagcag ctgatggcca ggggtacaca cacccctgct gttcacctct
     3661 cccaagctaa gggcctccgg cctggagact gtcataggct gccataggcc acagtggtgc
     3721 tttgtttttt taattttttt actctttctc atatgtagca agccaccctt ccctctgcgg
     3781 ccacttaggc aggctgtgct ctctggggct ggcctggctg tctagtttcc ggggaggcag
     3841 aggcagggac tttgaggcct tagtcaccat ccatgacatc acctcatctc acttcctgta
     3901 agacagggat ctggcagatg tccccagacc tcctgactca ggcctgcctt tcagcttttc
     3961 taccccactc ttgggggctg ctggctgaag agggtcaagg tgaggtcaga ggaagctgga
     4021 tggtggaggt ggcatgggca gaggttcctt gtgcttggtg ttgggtcaaa atgctgggaa
     4081 gctggctttg gagatccttc ctcaccatcc agctacctgc cagtcctttc cccgccatag
     4141 cctcctattt tcatgctcgc cccaatccct cacactagcc actcatcctt agtgggcatg
     4201 gccaagtggg cggaacagca gcctgatggc cccagacttg atgatgaagc ctagagaggt
     4261 actgaggagc agactcagga aactgaccgt ggctgatgtc tagtccagtc atatcatgcc
     4321 ctgacccctt tcctcctgga agacgtcctg gctcggggga gtaggtctca tgatagctgt
     4381 gcaggttttg tgcactgagg tccgtgggct atacccctgg ctttcctgcc tggaatgagt
     4441 ttgggcttaa cgtatcaccg ccccaccctg acgtgctgtc agtggtgtta gagtgtaaag
     4501 acctgcaggt ggggacccac aagctagagg tgggaaggac aaggatcttc tctgaaggag
     4561 tgtaagtggg agttgagggt tcaccctacc gggtatcaca gcctcccacc agcatctcca
     4621 gcaaggcggg tggggccgcc accggactag cttcaagtcc tgttcactcc agttcggtgc
     4681 tttgggatcc caagcttcct tgttaattta agtctgaaaa gaaatctggg tacatttgac
     4741 ccctgtgcca gtgatggaca tccatcccct gtgctttgtt gggctcctgt gttgtccctg
     4801 atgccatttt tctgtcctca catcagtatt aactcctgcc tttcagtgta cactttgtct
     4861 cattcctttc tcaccttccc ctgaaatgaa taaagtctcc cagctcccgt cgttgtgtgg
     4921 gctggcagaa atcacatgaa a
//
