LOCUS       XM_039083018            1543 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus UDP-glucuronate decarboxylase 1
            (Uxs1), transcript variant X2, mRNA.
ACCESSION   XM_039083018
VERSION     XM_039083018.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1543
                     /gene="Uxs1"
                     /gene_synonym="UGD"
                     /note="UDP-glucuronate decarboxylase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 1 long SRA read, 7 Proteins, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 12 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:246232"
                     /db_xref="RGD:628680"
     CDS             179..1543
                     /gene="Uxs1"
                     /gene_synonym="UGD"
                     /codon_start=1
                     /product="UDP-glucuronic acid decarboxylase 1 isoform X2"
                     /protein_id="XP_038938946.1"
                     /db_xref="GeneID:246232"
                     /db_xref="RGD:628680"
                     /translation="MSCVAVLRCLGAHCPRSPHRQNLLMMECQVPQRNRPPEEQCILS
                     TRAAFSIWILELKTDSDSVVSAVWGNFVNMRSIQENGELKIESKIEEIIEPLREKIRD
                     LEKSFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK
                     RNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTL
                     NMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMC
                     YAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQ
                     YVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDP
                     QKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKPARVKKGR
                     TRHS"
ORIGIN      
        1 cggctggccg gcggggcagg ccccggaccc gtgcggttcc tgggcatggt gagcaagggg
       61 ctgctgcgcc ttgtctcttc agtcaaccgc aggaagatga agcttctgct gggcatcgcg
      121 ctgttcgcct acgccgcctg aaaattactc agcagccgat tgttgccatt ctccgtggat
      181 gtcctgtgtg gcggtgctcc gatgtctagg cgcacactgc ccccgctccc cgcaccgcca
      241 gaacttgctc atgatggagt gccaagtgcc tcagagaaac aggccaccag aagaacagtg
      301 cattctcagt acaagggcag cgttcagcat ttggatattg gagttgaaga ctgacagtga
      361 ctctgttgta tcagctgttt ggggcaactt tgttaacatg aggtctatcc aggaaaatgg
      421 tgaactaaag attgaaagca agattgaaga gattattgaa ccattaagag agaaaatcag
      481 agatttggaa aaaagtttca cccagaaata cccaccagta aagtttttgt cagaaaagga
      541 ccggaagagg attttgatca ctggaggtgc gggctttgtg ggctcccatc taactgacaa
      601 actcatgatg gatggccatg aggtgaccgt ggtggacaac ttcttcacag gcaggaagag
      661 aaatgtggaa cactggattg gccatgagaa cttcgagctg attaaccatg atgtggtaga
      721 gccactctac atcgaagttg accagatcta ccatctggct tctccagcct cccctccaaa
      781 ctacatgtac aaccccatca agaccctgaa gacaaataca attggaacac taaacatgtt
      841 gggactggca aagcgtgtgg gtgcccgtct gctcctagcc tccacatctg aggtatatgg
      901 agatcctgag gtccaccctc aaagtgagga ctactggggc cacgtgaatc ccataggacc
      961 ccgagcctgc tatgacgagg gcaaacgtgt tgcggaaacc atgtgctatg cctacatgaa
     1021 gcaggaaggt gtggaggtgc gggtggccag gatcttcaac acctttgggc cacgaatgca
     1081 catgaatgat gggagggtgg tcagcaactt catcttacaa gcgctacaag gggagccgct
     1141 cacagtatat ggatctgggt ctcagacacg ggcattccag tatgttagcg atctagtgaa
     1201 tggcctggta gcactgatga acagcaatgt cagcagccct gtcaacctgg gaaatccaga
     1261 agaacacaca atcctggaat ttgctcagtt aattaaaaac cttgttggta gtggaagtga
     1321 aattcagttt ctctctgaag ctcaggatga tccacagaaa agaaaaccag acatcaaaaa
     1381 agcaaaactg atgctggggt gggagcctgt ggttccattg gaggaaggat tgaacaaagc
     1441 catccactat ttccggaagg aactagagta ccaggctaat aaccagtaca tccctaaacc
     1501 caagcctgcc agagtgaaga agggccggac gcgccacagc tga
//
