LOCUS       XM_039092133            9268 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus UV-stimulated scaffold protein A
            (Uvssa), transcript variant X3, mRNA.
ACCESSION   XM_039092133
VERSION     XM_039092133.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092133.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9268
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9268
                     /gene="Uvssa"
                     /gene_synonym="RGD1306371"
                     /note="UV-stimulated scaffold protein A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 1 long SRA read, 3 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 16 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:314061"
                     /db_xref="RGD:1306371"
     CDS             212..2374
                     /gene="Uvssa"
                     /gene_synonym="RGD1306371"
                     /codon_start=1
                     /product="UV-stimulated scaffold protein A isoform X1"
                     /protein_id="XP_038948061.1"
                     /db_xref="GeneID:314061"
                     /db_xref="RGD:1306371"
                     /translation="MDQKLSQLIEELTTSGESQLNAQKMKELKKICKSSEEQLSHAYR
                     LLMTQLTQDHAEIRLSAFQIVDELFTRSHQFRVLLVSDFQEFLELTLGTDNDHPLPPP
                     REAAQRLRQAAMQAVEGWNEKFGEAYKKLALGYHFLKHTKKVDFRDINVRTLAERKRE
                     EEKQKHLDKIHRESADRAKREMEEMSDEIGCCLTEVENCFRLLVPLDLGPYREDKFFG
                     EASGIAEDHAPCAWSPDLATPRGSGLSGPQDEEQPCCSKDLVASAHHAGSAVGLKAPA
                     PAATEDPCRDEDRHSEHSDPEDFLRSHGLGSHKYTLDVELPSDGLKVQENEDNLAVLH
                     AARDSLKLIQNKFLPAVCSWVQRFTRAGIYSGHLKQAIDLKMELELALKKYEELNIEP
                     GRGQRSRTEALEDSEEEDQDFVEVPEKEGYEPRIPDHLRAEYGLEPKAPLKTLEKHTA
                     VCSVQERTRRRREEEASDPTSAAAQMLRLQDCLSSPSSSSTRGPLGPEEAQKQAERAR
                     APMVPFGVDLCYWGQEQLTAGKILKSDSQHRFWKPHEVEEEVDSAHVSEMLHSRHITF
                     SGKFEPVQHKCRALRPNGRLCERQDRLKCPFHGKIIPRDDKGQPLNPEDRAREQRQQL
                     QQQRAHPDWQDPEFMKDVEAATGVDLGSSKYSKKGKGKKKKHPNLTDLRERANTARAR
                     LEKKVFAKGAVQRVVAAMNQMDQKKHEKFANQFNYALK"
ORIGIN      
        1 gagacaagag gctgcatccg gtggtccgtg tcaccggaac agcggaacgc tggtactgtc
       61 tcctgaagcg gagggtcagg cagcgattgc ggcggactga agggtcgtgg ccggtcagat
      121 tctcggcccg cagggtcgga tcggtcgccc ccgcagttat ctagagactg tcgcttgcag
      181 agagagagta tcctgtgcga ccagttggaa tatggatcag aaactttcac agttgataga
      241 ggagctcaca acttcaggag aatcccaact gaatgctcag aaaatgaagg aactgaagaa
      301 aatttgcaag tcttcagagg agcagctgag ccatgcctac cgcctgctaa tgacacagct
      361 gacccaggac cacgctgaga tccgcctctc agccttccag atcgtggatg agctcttcac
      421 ccggtcccat cagttcagag tgctgcttgt ttctgacttc caggaattcc tggagctcac
      481 actgggcaca gacaatgacc atcccttgcc accccctcgg gaggcagctc agaggctaag
      541 gcaggcagcc atgcaagctg tggaaggttg gaatgagaag tttggggaag cctataagaa
      601 gctagccttg ggctaccact tcctaaaaca caccaaaaag gtggattttc gggatataaa
      661 tgttaggact ctggcagaaa ggaagcgaga agaggagaag cagaagcact tggataagat
      721 ccacagagaa agtgctgacc gggctaagag ggagatggaa gaaatgtctg atgaaattgg
      781 atgctgcctg acagaagtgg agaactgctt taggctgctg gtgcccttgg atttgggccc
      841 gtaccgagag gataagttct ttggtgaggc atctggcata gcagaggacc atgctccttg
      901 cgcctggagc ccagacctgg caactccccg agggtctggt ctctctggac cccaggatga
      961 agagcagcca tgctgtagca aggacctggt tgcctctgca caccatgcag gatctgcagt
     1021 tggtctgaag gcaccagccc cagcagccac ggaagacccc tgcagggatg aagacagaca
     1081 cagcgaacac agcgacccag aggatttcct gcggagccat gggctgggct cccacaagta
     1141 cacgctggac gtggaactcc cctcagacgg tctgaaggta caggagaatg aagacaacct
     1201 ggccgtgctc cacgctgctc gagactcgct caaactcatc cagaacaagt ttctgccagc
     1261 ggtgtgctcc tgggtccagc ggtttacccg tgcagggatc tacagtggac atttaaagca
     1321 ggccattgac ctgaaaatgg aactggaact tgctctgaag aaatatgaag aactgaacat
     1381 tgagcctggg agaggacaaa ggagcaggac agaagcactg gaggacagtg aggaggagga
     1441 ccaggacttc gtggaggttc cagagaaaga gggttacgag cctcgaatcc ccgaccatct
     1501 acgagctgaa tatgggctgg agccaaaggc cccactgaag actctggaga aacatacagc
     1561 tgtatgtagc gtacaggaga ggaccaggag gagaagggaa gaggaggcct cagaccccac
     1621 ctctgcagct gcccagatgt tgcggctcca ggactgcttg tcatctccct cctcctcctc
     1681 taccagggga cctctgggac cagaagaagc ccagaagcaa gcggagcgag cccgagcacc
     1741 catggtgccc ttcggagtgg acctgtgcta ctggggccag gagcagctaa cagctgggaa
     1801 gattcttaaa tccgactctc aacaccgctt ctggaaaccc cacgaggtag aggaagaggt
     1861 ggacagtgcc catgtttctg agatgctcca cagccgacac attacctttt ctgggaaatt
     1921 cgagcctgtg cagcacaagt gccgggccct caggcctaat ggcaggctct gcgagcgcca
     1981 ggatcggctg aagtgcccgt tccatgggaa gatcatcccc agagatgaca aggggcagcc
     2041 tctcaaccct gaagacagag cccgtgaaca gaggcagcag cttcagcagc aacgggcaca
     2101 tccagattgg caggaccctg agtttatgaa ggacgtggag gcagccacag gggtggacct
     2161 cggttcctcc aagtatagca agaagggcaa agggaaaaag aagaagcacc ccaacctcac
     2221 tgaccttcga gaacgtgcca acactgcccg agcccgcctt gagaagaagg tctttgccaa
     2281 aggagctgtg cagagagtag ttgctgccat gaaccagatg gaccagaaga agcacgagaa
     2341 gtttgcaaat caatttaatt atgcactgaa gtaaaagggt gtgggtgtgg cgaatgcgca
     2401 tggtcccctc tggccatcag ctccttcctt ccctttcaga gctcactggg ataggaagaa
     2461 gggcaggctt aagtctgagt agaattagag cttttttatc tgtgtgtaac aagggaagga
     2521 tgcactaagt actctccagg aggccagggg aggccagggt ttgagcccaa ctgttttaac
     2581 cacacgtgtg gtaccacacc tgtaattgca acacttggaa gacataaaca ggaccgaggc
     2641 cagtatgaag tacagagcaa gactgcttga caaacgagaa caaaaagcca gatgaggaga
     2701 tgcacacctg taatcctcac tcaggaggca gcgcagggag agcagcacga gctgaaagct
     2761 aacctagttg ccaggcatgg cggtgcgctt cttaatgcca gcactcagaa ggcaaggcag
     2821 gtgggtctct gtgagtttga gaccagcctg gtctacagag tgagtttcaa gacagagaaa
     2881 ccctgtcttg aaaacaaaca aacaaacaaa caaacagcta acctagtcca agttgtaagt
     2941 tcttgctgag ggtgggagga atcccttcgg gatggtgtac ccgcattgga gtcagattgg
     3001 ggcagccact catctggtcg caggtcagtg cttgagcagt gcatgtgtcc ctggtggtgc
     3061 tatgtacttt gtaatgcctt caggaatctg ctctttcgtg atatgctgtt taatacaaat
     3121 gtccacctcc tgataaaact ctgtggactg gctctgttgg accctaactc acatgttatg
     3181 cagtccccct actttatgca cagagcttga ccaatgacac catctgcttc cagaacttta
     3241 ttatcctcag acaaactgcc cagccacctc taagtccact ttctatctcc atgtttgtgt
     3301 tttttagaat aattgggtct gtggtttttg tttttgtttt gttttgttga gatgtggcaa
     3361 tgccagctgg tctccaacgc acagagatcc tcctgcctct gcctcttcag tactgagatt
     3421 aagggcatgt gccaccactc ctggctgaat gtggcctttt gttgctggct tctttgcctc
     3481 tgtttttttt gtttgtttgt ttgttttttt gtttttcgga gctggggacc gaacccaggg
     3541 ccttgcgctt gctaggcaag cgctctacca ctgagctaaa tccccaaccc cttgcctctg
     3601 ttttaagatt cttccgtatt gtaataccaa tgcttcattc ctgtgtattg cacataaaaa
     3661 tcacagcaga ggacgagggg aaccgctccg cagataaagc actagccatg cagttatgag
     3721 gactgattgg actccacacc acccataaaa accaagtggt tgtgcacagg ttgcctctgc
     3781 ctcccgagtc ctgggactaa aggcgccacc aaggcctgtg tccatgggtc cattattgat
     3841 gtttggtctg ttcctacctt agggctgctg tgaatatctg tgcttgagtt tttgtgcaga
     3901 taactggttt tgctaatcac tgatgcatat agtaacttct ctctatgaac taaactgtcg
     3961 aatggtggca ccatttacac tcaccagtgg ttcctgaggg ctctgtgccg tcactggctg
     4021 tcttcgtttc ttttgctttt ttgagacgtc tgcatgagag tactgtgttc acatcatttc
     4081 caccccccct gccctctcca gaggtctctt cctcatcatc atatgaagat agctgttgtc
     4141 atcttcagca gtaaggtctt accttcaggt tctgttaggc agctaagggc agcagcatta
     4201 gcctgtatta ttttggtggt ctcttaacgc cctggcctca acctgggagg tttctgttca
     4261 tgcacatgaa gttttgttag tgtctactta aagacaaaaa aaaatcacat gattatctca
     4321 atagatgcag aaaacacctt tgacaaaatc caatatggct tcataataaa actcttaggg
     4381 agactaggag tggaaggaac atgtaaagga aaaaaaaacc tatcaaaacg acaactaatt
     4441 tctcaatgga aattgtaaaa agcagaagag tccggaccag gggacttcaa ggtctaaaag
     4501 accatggata ctcagcaaat ttttctgcca tagttgaagg agaaagaaaa atgttccgta
     4561 ttataaacaa gccagaagaa ttcacgtcca ccaaattgcc ctacagagaa tacctgaagc
     4621 aatcaatact tgagactgga gaaggccgag gataatggga agcaagtgaa actgtgatta
     4681 cggaagcaca aaaggatgaa tgcagagaac caaccactgg agccagcgct cacctttgac
     4741 ctcagctccc atgcttgaca gtgggtagct ggatggactg agaactccgc tttatagact
     4801 ggggccacct taaagcttaa ggatggagaa aaggatccca gcaaatgcaa acaggaaggg
     4861 aggggcgcca ctgccttttc accttgtctt atttttgaga ctgtcttctg tgcagtccta
     4921 gcctgctatg tgaaccaggt gggccttgaa ctcagagatc tgcctgcttc tgccttccaa
     4981 gtggtggaat taaagacaaa ggctcttcat cctaatcaag agaacagtcg gccgccaata
     5041 cattacagtt ctgcatgcac caaactctaa cacacccaat ttcataagaa acagccatta
     5101 acttaaagat acagattcgc cagttctgta ttagtgggag atttctgtac cctgctttct
     5161 ccagaagaca ggtcatcttc actaaagaat atacattcta cacagcaggc caaataccta
     5221 aaatagatca tattggccag gaggtggtag tccacacttt tactccaacc ctgtctcaaa
     5281 aataaaaaat aaaaataata aaatagatca taatttgaca caaaatgtat cttaacaagt
     5341 tcagaaaaat tgaaaaaagt tagtgtaatc taaccacagt gcaataaggc ttcagctcaa
     5401 taacaaacat atcccaggag atcacacaaa ttggtgaagg gtaaacagca cattactaag
     5461 taatacatgt gcctaaagga tcagcaaaag gttttaatcc tgaagtcaaa actgaaaatg
     5521 aggtctctgg atacattgaa tggagtccta tgagggacta actctaccta ttaaaaatct
     5581 gaagaaaaaa gacccacaaa taaatgactt aatgatgtaa ttccatgatt tgtaaaagca
     5641 agaacaaacc aaaattgagg agagagaaat acataggaaa aaaacaacat aaattaatga
     5701 aattgaaaga aaaaaaatca atgaatctaa gagctggttc tttgacaagc cattggcaga
     5761 tccagctaac caattaacca aaaccaaaac caacaaaaat aaagatgtga ttcaaattaa
     5821 tagagttgaa tggaaccatc acaacaccaa tgaaatttag agtactataa aggaatattt
     5881 aaaaacctct tccccattaa gttagaaact ctaaagaagt gcacaaggca cacgtgtggt
     5941 gcgcatacgt gcaagcaaaa tgctcatatg aatagttttt tatttaaaaa aggaatggag
     6001 ggggttgggg atttagctca gtggtagagc gcttgcctag caagcacaag gccctgggtt
     6061 cagtcctcag ctctgaaaaa aaaaaattta caaaaaaaaa aaaaaaaaaa aaaaaggaat
     6121 ggatggattt ctacattagc ccaaattacc aaaggtaaac tgagagcgac aacttgaaca
     6181 gacctgtaac attgtgctac caaaccctcc caaaaagacc catagcaaat aaggagattg
     6241 gaacagtggg aaaaagaaat cttaaacaaa ggaaaagggc ctaggcccag atggattccc
     6301 aagaaaattc cactagactt tcacagacct acagccaata cttaaattta aaaaaataaa
     6361 aacagcttct ttccatgaag ccagtattac tttaatacca aaaccatgtc ggcaacaaca
     6421 atatctctga tataagcaaa tatctttgat gggtgtaggg gtgtagatga aaaaaatcca
     6481 ataaaatact gcaaactgaa tgcaggactg aatgtagata atgaaccttt gagtcatgaa
     6541 agaggatata aagttaattc tttttctagt tcgttcgttc tctctctctc tctcctctct
     6601 ctctctctcc tctctctctc tctccctctc tctctctctc tctccttctc tctctctctc
     6661 tccctctctc tctctctctc tcggtagtta agtgtaagga aagtgtaaga tctaccgtga
     6721 agcttcacag ctgttcactg agatgggtaa gctttgggtc tggttaactt cactgtgtgt
     6781 ttttttttta taagtttttc ataataaact ttgctgttgt tggttttttt ttttttttgt
     6841 tttgtttttt tttttgtttt ttttttttga agatttctct gtgtagcccc ggctgtcctg
     6901 gaactcactc tgtagaccag cctggtctta aactcagaaa tttgcttgcc tgtctcccag
     6961 ctgctcagat tagggcacgc accaccaccc acctggcttt gtaataaagt tttaataata
     7021 ataaaaagat ctgttatgat cataataaaa gtatatgata agcccacagc taacatcatc
     7081 ctagatgaaa aatatgaaga aatcctgcat tccaagctgt cttacagaga tatagcaatg
     7141 gaaatagtct tgtactggca gaaaaacaga tgtgcatcca cggaactaaa caggctcaaa
     7201 cgtgagtgca catagctaca gccagctaca tctgaccgag atcccagaca tacacactgg
     7261 agaaaagacg gcagcctcaa cagacggggc tcggagacca gatgcccaca tggacaagag
     7321 taaacttaga cgcatatcta tcacgcgctc atgtaaggaa gtcagaagat aagccttcaa
     7381 gaatccattc gctccctcca ctgtccaggt cctgggattg aactcagatg ggaagtttta
     7441 gcagcagatg cctttgccca ctgaaccatc tcaccagccc caaggttttt catcttcata
     7501 aagtccagtt acatgtttat tttgtttctt gtgctgttgg tatcattcct aatatactaa
     7561 ttatatatgt gtatatatgc atataaacac acactgctta atttaaggca cagagattta
     7621 ctcaaggttt tctgagactt ttgttgtgtt attattattt ttttttttga aacagagtct
     7681 ctatgtagtc ctaactgccc tggaactcac tatgtagacc aggctggcct ccaactaaca
     7741 gatatccacc agcctctgct ctccaagtgc tgggattaaa agcgtgtgtc actacactca
     7801 gctttcttct gagcattgta gaattttaac tcttccgtgt aaagctttga tccatttgga
     7861 atcaagtgtg tgtgtgctgt gaggtagggc cgtctttgtt gttggcattt gggactttca
     7921 ttgtccttgc atttttgatc gttagcattg gggatccttg gccactgttg tagtagggtt
     7981 taccataact gtggtaaaac atcatgacca aagcgcttgg ggaggaaagg atttatttgg
     8041 tttacacttc cagatcacag ttcaccatta aaggaagtca ggacaggaac tcaattcaag
     8101 cagggtagga ggaacccgaa ggcaggttaa gattcatgaa cttctgatag tgttctgttt
     8161 aatcgagctg tcacttattt ttagtgtttt acagttttta taggtcactt atattaaaaa
     8221 ttatatccct acgtgcttta atgctttttt tttttttggt tctttttttt tccagagctg
     8281 gggaccgaac ccagggcctt gcgcttccta ggcaagcgct ctaccactga gctaaatccc
     8341 cagccccgct ttaatgcttt tataaatgtt actgttctca gagttccgta tttagatttt
     8401 ttttgctaac ttatagaaat acagttaatt tttattttga tcttgtatcc tgcagctctg
     8461 tgaaacttgt ctgttagtta atagcttatg tgtttgttta tgttagaatt ttttctgtgc
     8521 gcaatactgg tatccttaaa cagacacgtt tcctttctcc tttctggata tggtgttcgc
     8581 ttgtttctct acatgcacgc acgcacgcaa gcacgcaggc aagcaccaca cgcacacctt
     8641 aattgctctg gttagcatct ccagtctagt gttgaatctc ctgacctctc acacagacac
     8701 agtgtgataa caactgcgga tttttgtaga tgtcctttat catgtttctt tttcatttta
     8761 atgaagtcgt tttatttttt cttttgttgc ttgtaatttt gtgtcatttc aaagaaacca
     8821 ttgcctaatt tcaagccaca aagatttgct ttggttttgt tgtttttgtt attgtagttg
     8881 ggttttttgt ttggttttgt ttttgagagt tgattttttt ttttttttgt caatgtttct
     8941 ttttggtttt gttttgaaac agggtttcac tatgtagccc tggctggctg gaaacccaag
     9001 aagtttacct gcctctctgc cccaagtgct aagattaatt aatgacatgg acgcctcctc
     9061 ctggccttgg gagagctgca ccgttataga ctgtatgtgt aaagttcttt atccatttta
     9121 agtcaccttt tatgtatgct gttgagtgtt ttgtcttaaa aggttcaatt ttgtaaaatg
     9181 attttctccc actgctaaat gccttttctg tgtcctttac tgaggtggtc atgtgcttgt
     9241 tccgagagat gtgctgtatt acatactg
//
