LOCUS       NM_001107647            2661 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus UTP15, small subunit processome component
            (Utp15), mRNA.
ACCESSION   NM_001107647 XM_001069733 XM_226713
VERSION     NM_001107647.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2661)
  AUTHORS   Sato,M., Araki,N., Kumeta,M., Takeyasu,K., Taguchi,Y., Asai,T.,
            Furukawa,K. and Horigome,T.
  TITLE     Interaction, mobility, and phosphorylation of human orthologues of
            WD repeat-containing components of the yeast SSU processome t-UTP
            sub-complex
  JOURNAL   Biochem Cell Biol 91 (6), 466-475 (2013)
   PUBMED   24219289
REFERENCE   2  (bases 1 to 2661)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 2661)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 2661)
  AUTHORS   Prieto,J.L. and McStay,B.
  TITLE     Recruitment of factors linking transcription and processing of
            pre-rRNA to NOR chromatin is UBF-dependent and occurs independent
            of transcription in human cells
  JOURNAL   Genes Dev 21 (16), 2041-2054 (2007)
   PUBMED   17699751
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC131851.1.
            
            On Oct 7, 2007 this sequence version replaced NM_001107647.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC131851.1, FQ211666.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2661
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q12"
     gene            1..2661
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /note="UTP15, small subunit processome component"
                     /db_xref="GeneID:310019"
                     /db_xref="RGD:1310992"
     exon            1..109
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     exon            110..274
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     CDS             185..1771
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /note="UTP15, U3 small nucleolar ribonucleoprotein,
                     homolog; UTP15 SSU processome component"
                     /codon_start=1
                     /product="U3 small nucleolar RNA-associated protein 15
                     homolog"
                     /protein_id="NP_001101117.1"
                     /db_xref="GeneID:310019"
                     /db_xref="RGD:1310992"
                     /translation="MAGYKPVVIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKV
                     DFSPQPPYNYAVTASSRIHIYGRYSQEPVKTFSRFKDTAYCATFRQDGQLLVAGSEDG
                     VVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEILTF
                     KEHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSG
                     GLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKIYS
                     TTSYKVVHSFDYAASILSLALSHQDETVVVGMTNGILSVKHRKSEAKKESLPRRRRPA
                     YRTFIKGKIYTKQRDDIVVTRPAKKHLEWYDRDLKSFRISKALDRVLEPNCVIKTPEV
                     TVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIIIDIYL
                     PVIGQSSVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMTRNGSAPVWEHVPA
                     ELPEEKTESPRQPSDTDKNS"
     exon            275..367
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     exon            368..552
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     exon            553..731
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     exon            732..857
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     exon            858..993
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     exon            994..1078
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1228
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     exon            1229..1330
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     exon            1331..1464
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     exon            1465..1523
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
     exon            1524..2637
                     /gene="Utp15"
                     /gene_synonym="RGD1310992"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgattttga gcgagtgctt ctgagtggtc tgctgtaggg agctggcgaa gtctggggag
       61 tcgtcctggg gatcggggtg cctcggcgga ccctcggtgc cccgcggaga cccagagcag
      121 aatcactgct attctttagc tccagactac tgactcccgt ccaaaagtgc acttgcatga
      181 aaccatggct ggttataaac ctgtagtgat tcagacatat cctgtacttg gtgagaaaat
      241 cacccaagac actctgtact ggaacaacta taagacccct gttcagatta aggaatttgg
      301 tgcagtgtcc aaagtagact tttctcctca gcctccatat aactatgccg tcacagcttc
      361 ttcaaggatc cacatttatg gccggtactc tcaagagcct gtaaaaacct tttcccgctt
      421 taaggacaca gcatactgtg ctacttttcg tcaggatggt cagttgcttg tcgctggcag
      481 tgaagatggc gtggttcaac tttttgatat tagtgggagg gctcccctca ggcaatttga
      541 aggccacaca aaagcggttc atacagtaga ttttacagct gacaaatatc acgtggtctc
      601 tggagccgat gactatactg ttaaattatg ggatattcca aactccaaag aaattctgac
      661 attcaaagaa cattctgact atgtgaggtg tggctgtgct agcaaactga acccagacct
      721 ttttgtaaca ggatcatatg atcataccgt gaagatgttt gatgcccgga caaataaaaa
      781 tgttctctgt gtggagcatg ggcagcctgt ggagagtgtc ctccttttcc cctctggagg
      841 gcttctggtg tctgcaggag gccgctacgt taaagtctgg gacatgttaa aaggcgggca
      901 gctgcttgtt tctttgaaaa atcatcacaa gacggtgacg tgtttatgtc tgagcagctc
      961 tggacagagg ttactttccg gctcactgga caggaaagtc aaaatctaca gcaccacttc
     1021 ctacaaagtc gtccacagct ttgactatgc agcctcaatc ttgagtctgg cgctttctca
     1081 tcaagatgag acggttgttg taggaatgac caatggaata ctgagcgtta aacaccggaa
     1141 gtctgaagca aagaaggagt ctcttcccag gagaaggagg cctgcatatc gaacctttat
     1201 taaaggaaaa atttacacga agcaacggga tgacattgtg gtcactaggc cagcgaagaa
     1261 gcacctagag tggtatgaca gggatctgaa aagttttcgg atctcaaagg ccctcgacag
     1321 agtcctcgag cctaactgtg tgataaagac ccctgaggtt acagtttcca tcataaagga
     1381 actgaatcgg agaggcgtcc ttgccaacgc tcttgcaggt cgggacgaga aggagattac
     1441 ccgggtcctt aactttttga taaggaatct gtctcagcca agatttgccc ccgttttgat
     1501 taacgctgct gaaataatca ttgatatata tttacctgta attggccagt catcagtagt
     1561 cgataaaaag tttatagtac ttcaaggact cgtagaaaaa gaaatcgatt accaaagaga
     1621 actcctagaa accttgggga tgatggacat gctgtttgct accatgacac ggaatggcag
     1681 cgcccctgtg tgggagcacg tgcctgctga actcccagag gagaagacag agtcaccgag
     1741 gcagcccagt gacacagaca agaactccta acgggaattg tgtgactgaa ttaccaggaa
     1801 gagggcggct tcagtacatt caaaaggatg attgacagaa gtttgatgga agagactgga
     1861 ttaactaaaa ttggggcata agtatctgtt tcaagatgtg gttttccatg tattgatttc
     1921 tcttattttg tatcgaagac cttagttgtc tcggtcacag tgtctgttga ccttggatga
     1981 attgatactg accttaatgg agccaaaacc tcagttgctg tggggccttg tggccctctg
     2041 gagaggtttc caagcggagt cctgccaaga gaacaacctt ggttttgtgc tttctgcttt
     2101 tagcctggga aatatcaaga acagcaataa ggaaacatcc ttctctgtcc tccctgcccc
     2161 ggggagcctc gccctacccg cttgctggtg tcttcgaagt gttgagtcaa gtgctttcat
     2221 cagctgcttg tgggactgtc ttgtaagtgt ggcacaacac tggatattgc ccctggaagt
     2281 gtgtttaggg tgtgatgagt ctgttttgtc acccccaaat tgtgcccatc accagtgttt
     2341 tctttagcct ggcctatcca gagagaactg actgaaccag ttcccgcccc tcagcctgct
     2401 gcctcccttc cgtcttcacg gtgcttcagc tgtcctctcc tctattgtga aggcctttta
     2461 gcttgcacct gtgtcttaga gtgtatctgt atgtgtaacc ctttgtaaca attctctttc
     2521 tctgcttaac acttcttctc tgttcttcat tttgtaggtc agatcaaaca gcagccagtt
     2581 tgttttgaaa atttgttttt gaaagttcat tgtaaattat atttttttat aaagacaaaa
     2641 aaaaaaaaaa aaaaaaaaaa a
//
