LOCUS       XM_039099850            2059 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus UTP14A small subunit processome
            component (Utp14a), transcript variant X2, mRNA.
ACCESSION   XM_039099850
VERSION     XM_039099850.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099850.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2059
                     /gene="Utp14a"
                     /note="UTP14A small subunit processome component; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 7 ESTs, 1 long SRA read, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:317579"
                     /db_xref="RGD:1359313"
     CDS             101..1879
                     /gene="Utp14a"
                     /codon_start=1
                     /product="U3 small nucleolar RNA-associated protein 14
                     homolog A isoform X2"
                     /protein_id="XP_038955778.1"
                     /db_xref="GeneID:317579"
                     /db_xref="RGD:1359313"
                     /translation="MSAIKATKGLLALSQQDDLMDLPTNYPLSDSEDEAGSDGERKHQ
                     KLLEAIGSLSGKNRWKLPERSEAGLKVSEFNVSSEGSGEKLALSDLLEPLKSSSSLAA
                     VKKQLNRVKSKKTLELPLHKGEVERVHREVAFSNTSQALSKWDSVVQKNRAAEQLVFP
                     LEKEPTFVPMEHVFCEWKARSPLEQEIFNLLHKNKQPVTDPLLTPVEKASLKAMSLEE
                     AKIRRAELQRARALQSYYEARARRMKKIKSKKYHKIVKKGKAQKALKDFEQLRKVDPD
                     AALEELEKMEKARMLERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQ
                     KLQVVSESEEERDAEEEEALVPDIVNEVQKAAHGPNPWMLRSCNHDAKENEIQADPEQ
                     LPEPAAPEFSKNEGDEKPVAEEGKLLEELEKRRSLRKRSELNHDAEPARDQKPKDSTN
                     QEVLSELRALSKKLSKENHPFEKQKESPAKTVGLVQEEEPGPEEDEPLLLQRPERVRT
                     LEELEELGKEYSLPNKELSRPSVEGEQMRTNPQNQTKGKNKKEQMISLQNLLTTRTPS
                     VTSLALPTTVEELVSRARIPGLWWGG"
ORIGIN      
        1 gtgcgtgatt ggcggaagca aaaattgctt tgcggcaggc aaagaggttg ctctctcttt
       61 ggcttccgtt cttgacccat gtgagttacc ggctactaag atgagcgcga tcaaagctac
      121 gaagggcctt ctggctttga gccagcagga cgatctaatg gatttgccaa ccaactaccc
      181 tttgagtgac agtgaagatg aggcgggcag tgatggagaa agaaagcatc aaaaacttct
      241 ggaagcaatt ggttccctta gtggaaaaaa taggtggaaa ttgcctgaga gatctgaagc
      301 tggtctgaaa gtgtctgagt ttaatgttag ttctgaagga tctggagaaa aattggccct
      361 ttcagatttg cttgaacctc ttaaatcttc atcctcattg gctgctgtta aaaagcaact
      421 gaatagagtc aaatcaaaga agactttgga attacctctt cacaaaggag aggttgaacg
      481 ggtccacaga gaagtggcct tcagtaacac ttcacaagcc ctctccaaat gggattctgt
      541 tgttcagaag aaccgggcag cagagcagct ggtctttcct ctggagaagg agccgacttt
      601 tgttcccatg gaacacgtgt tttgtgagtg gaaggcaaga agtccactgg aacaggaaat
      661 ctttaacctc ctccataaga acaaacagcc agtgacagac cctttactga cccctgtgga
      721 aaaagcctcc ctcaaagcca tgagcctgga agaggctaag attcgcagag cagagcttca
      781 gagggcccga gctctgcagt cctactatga agccagggct cgaagaatga agaaaatcaa
      841 aagtaaaaaa tatcacaaaa ttgtgaagaa gggaaaggcc cagaaggccc tcaaagactt
      901 tgagcagcta aggaaggttg atcctgatgc tgcattggaa gaactggaaa aaatggaaaa
      961 agccagaatg ctggaacgaa tgagccttaa gcatcaaaac agtgggaaat gggccaagtc
     1021 aaaggccatt atggcaaaat atgacctgga ggcccgccaa gctatgcaag aacagttggc
     1081 taagaacaag gaactgacac aaaagctgca agttgtttca gagagtgagg aagagagaga
     1141 tgctgaagag gaagaagccc tagtccctga tatagtgaac gaagtgcaga aggctgccca
     1201 tggacccaat ccgtggatgc tccggagttg caatcatgat gcaaaagaaa atgagatcca
     1261 ggccgatcct gaacaactac ctgagcctgc ggcccccgag ttctctaaaa atgagggaga
     1321 tgaaaaacca gtggcagagg aaggcaaatt gttggaggag ttggagaaaa ggagatccct
     1381 tcggaaaaga tcagagctca accatgatgc tgagccagcg cgtgaccaaa agccaaaaga
     1441 ttctaccaac caggaggtgt tatctgaatt gagggcattg tctaagaaac tcagtaagga
     1501 aaaccatcca ttcgagaagc aaaaggagag tccagcaaag actgttggcc tggtccagga
     1561 agaggaacct ggcccagagg aagatgagcc tctattgctg cagaggccag agagagtacg
     1621 aactctggag gaactagaag agctaggtaa agagtacagt cttccaaata aggagctctc
     1681 tagaccttca gtagaagggg agcagatgag gacgaaccca caaaatcaga ccaaggggaa
     1741 aaacaagaag gagcagatga ttagtctaca gaacctcctg actacaagaa ctccttctgt
     1801 gacatcactg gcacttccga caacagtgga ggagttggtg agcagagcca ggatccctgg
     1861 cttatggtgg ggtggttgac agttgaacag aatgggtcct tcttacacac agcagtcaat
     1921 gcaggatgat gaagtgaaga gaaaccaaaa gcaaatgata aaggaagctt ttgctgggga
     1981 tgatgtcatc aaagagttcc taaaagagaa gagagaagct gtccaggcca ataagccaaa
     2041 ggacgtggat ctgaccttg
//
