LOCUS       NM_134380               2047 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus integral membrane transport protein UST5r
            (Ust5r), mRNA.
ACCESSION   NM_134380
VERSION     NM_134380.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2047)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2047)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Nov 26, 2020 this sequence version replaced NM_134380.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ132858.1, BC098905.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760476 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-604               JAXUCZ010000001.1  214714931-214715534 c
            605-708             JAXUCZ010000001.1  214713793-214713896 c
            709-863             JAXUCZ010000001.1  214708388-214708542 c
            864-1032            JAXUCZ010000001.1  214708129-214708297 c
            1033-1156           JAXUCZ010000001.1  214703671-214703794 c
            1157-1272           JAXUCZ010000001.1  214646776-214646891 c
            1273-1487           JAXUCZ010000001.1  214645762-214645976 c
            1488-1596           JAXUCZ010000001.1  214642529-214642637 c
            1597-1800           JAXUCZ010000001.1  214641401-214641604 c
            1801-2047           JAXUCZ010000001.1  214640172-214640418 c
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..2047
                     /gene="Ust5r"
                     /note="integral membrane transport protein UST5r"
                     /db_xref="GeneID:171398"
                     /db_xref="RGD:620985"
     exon            1..604
                     /gene="Ust5r"
                     /inference="alignment:Splign:2.1.0"
     CDS             203..1861
                     /gene="Ust5r"
                     /codon_start=1
                     /product="integral membrane transport protein UST5r"
                     /protein_id="NP_599207.2"
                     /db_xref="GeneID:171398"
                     /db_xref="RGD:620985"
                     /translation="MAFQELLNQVGSLGRFQILQMAFVFLINVSVVPHSTIENFTAAI
                     PSHRCWVPILDNVTVSDNHSRILNQDKLLKISIPLDSHLRLDKCRRFAQPQWHLLDLN
                     DTFSSVTEADTEPCVDGWVYDRSNFHSTTVTEWDLVCESQVLNSVTKFSFMIGAFIGG
                     IVNGPLSDRFGRKFVLKCALLQMAITETCVGFASNFFIYCSLRFLAGMTFEPILVNSN
                     LLMFEWTSHKFLAMMSVIAPCAGSFGSMILAGLAFQFQNWHHLQLAMSVPIFFFLILT
                     RWLSESARWLIVTNKPQKGLKELRKVAHMNGMKNSGDNLTMEVVRTSMKRELEAAKAR
                     PSPRDLFHTPILRKRICAMSFMRILFMLSIFGMSLHLQHLSSNIMLLQFVVSASSLLF
                     SVIGPYVFNRMGRRITQMVVMTLRGICILTAVFVPQEMQILRITVVTLAGAFSALSFG
                     VNRLHTNELLPTTLRATAIGVIGMFGNSGFFLAPLFMILASYSPNLPWIFYGGFSILN
                     GFTVFLLPETKNQPLPDCIHDIGNDWEESRQEMKEDPTIKVTRF"
     exon            605..708
                     /gene="Ust5r"
                     /inference="alignment:Splign:2.1.0"
     exon            709..863
                     /gene="Ust5r"
                     /inference="alignment:Splign:2.1.0"
     exon            864..1032
                     /gene="Ust5r"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1156
                     /gene="Ust5r"
                     /inference="alignment:Splign:2.1.0"
     exon            1157..1272
                     /gene="Ust5r"
                     /inference="alignment:Splign:2.1.0"
     exon            1273..1487
                     /gene="Ust5r"
                     /inference="alignment:Splign:2.1.0"
     exon            1488..1596
                     /gene="Ust5r"
                     /inference="alignment:Splign:2.1.0"
     exon            1597..1800
                     /gene="Ust5r"
                     /inference="alignment:Splign:2.1.0"
     exon            1801..2047
                     /gene="Ust5r"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaacaagaag ctccatgccg aatccttagc tccctagaag gtaatggttc tctgactgca
       61 atggagaagt aatgaggggc aaacagcaca ggatcaaccc tgttatggtg tctttgtgaa
      121 atatatgttc tttttaaata ctttgtacta atttacatga aagtattatt tgtgtctcat
      181 tggagatatt tattcagctt caatggcctt tcaggaactc ctgaatcaag taggaagcct
      241 agggcgattc cagatccttc agatggcttt tgttttttta atcaatgtta gtgtggtacc
      301 tcatagtaca attgagaact ttactgcagc cattcccagt catcgctgct gggtcccgat
      361 cctcgacaat gtcactgtct ctgataatca cagcagaatc ctgaaccaag ataaactcct
      421 gaagatctcc atccccttgg actcccacct gagactagat aagtgtcgtc gttttgccca
      481 accacagtgg catcttcttg atttgaatga tactttctcc agtgtcacag aagcagacac
      541 tgagccctgt gtggatggct gggtatatga caggagtaac tttcattcta ccactgtgac
      601 tgagtgggac ctggtgtgtg aatctcaggt actgaattct gtcactaaat tttcatttat
      661 gattggtgca tttataggag gtattgtaaa tggacctcta tcagacaggt ttgggaggaa
      721 gttcgtttta aaatgtgctt tattacaaat ggccatcact gaaacctgtg taggttttgc
      781 ttccaacttc ttcatttatt gctcattaag attcctggca ggaatgactt ttgaacccat
      841 tctagtaaat agtaacttgc tcatgtttga atggacaagc cataaatttc tagccatgat
      901 gtcagtgatt gcaccttgtg ctggtagctt tggaagcatg atattggcag gcctggcttt
      961 tcaatttcaa aactggcacc acctccagct ggcaatgtct gtaccaattt tcttcttcct
     1021 tatactcaca aggtggctgt cagagtcagc tcggtggctc attgtgacca acaaacccca
     1081 gaagggctta aaggaactta gaaaagttgc acacatgaat ggaatgaaga attctggaga
     1141 caacctaacc atggaggttg taagaacaag tatgaagagg gaacttgagg cagcgaaggc
     1201 gagaccttct ccaagagact tgttccacac acccatccta cgtaagcgga tatgtgccat
     1261 gtcctttatg agaattttat ttatgctatc aatttttggc atgtcacttc acctccaaca
     1321 cctgagttct aatattatgt tgttgcagtt tgttgttagt gcatcatcct tactattcag
     1381 tgttattgga ccttatgtat ttaatcggat gggccgtaga ataacccaaa tggttgtcat
     1441 gactctgagg ggaatctgta ttctgactgc tgtatttgta cctcaagaaa tgcagatcct
     1501 gcgtattact gtggttacat tggcaggagc attttctgct ctaagttttg gtgttaatcg
     1561 tctacataca aatgaactac ttcccaccac gttaagggca acagctatag gagtcattgg
     1621 aatgtttggt aatagtggat ttttcctggc acccctgttt atgatactag cgtcatattc
     1681 tcccaacttg ccctggatct tctatggtgg attctccatc ctcaatgggt ttactgtgtt
     1741 tctccttcct gaaaccaaga atcagcctct gcctgattgc atccatgata taggaaatga
     1801 ttgggaagaa tcaagacaag aaatgaagga ggatcccacc attaaagtca cacggtttta
     1861 aagaacacct gaaattatct gaacgaagga caggagaaaa aatgatattc aggacatggt
     1921 gataattttt ccaggatgat tactcagaat tattcattta tagtatcaaa tttcttaata
     1981 aaaaaagata aaatagaaaa cacgtgtcat attaaaattg ctgaaataaa ttactcaatg
     2041 tcaaata
//
