LOCUS       NM_001106120            5241 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus USP6 N-terminal like (Usp6nl), mRNA.
ACCESSION   NM_001106120 XM_001070749 XM_214508
VERSION     NM_001106120.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5241)
  AUTHORS   Zenner HL, Yoshimura S, Barr FA and Crump CM.
  TITLE     Analysis of Rab GTPase-activating proteins indicates that Rab1a/b
            and Rab43 are important for herpes simplex virus 1 secondary
            envelopment
  JOURNAL   J Virol 85 (16), 8012-8021 (2011)
   PUBMED   21680502
REFERENCE   2  (bases 1 to 5241)
  AUTHORS   Haas AK, Yoshimura S, Stephens DJ, Preisinger C, Fuchs E and Barr
            FA.
  TITLE     Analysis of GTPase-activating proteins: Rab1 and Rab43 are key Rabs
            required to maintain a functional Golgi complex in human cells
  JOURNAL   J Cell Sci 120 (Pt 17), 2997-3010 (2007)
   PUBMED   17684057
REFERENCE   3  (bases 1 to 5241)
  AUTHORS   Yoshimura S, Egerer J, Fuchs E, Haas AK and Barr FA.
  TITLE     Functional dissection of Rab GTPases involved in primary cilium
            formation
  JOURNAL   J Cell Biol 178 (3), 363-369 (2007)
   PUBMED   17646400
REFERENCE   4  (bases 1 to 5241)
  AUTHORS   Fuchs E, Haas AK, Spooner RA, Yoshimura S, Lord JM and Barr FA.
  TITLE     Specific Rab GTPase-activating proteins define the Shiga toxin and
            epidermal growth factor uptake pathways
  JOURNAL   J Cell Biol 177 (6), 1133-1143 (2007)
   PUBMED   17562788
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473990.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001070749.1, XM_214508.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5241
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.3"
     gene            1..5241
                     /gene="Usp6nl"
                     /note="USP6 N-terminal like"
                     /db_xref="GeneID:291309"
                     /db_xref="RGD:1311786"
     exon            1..133
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            134..225
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     CDS             222..2672
                     /gene="Usp6nl"
                     /codon_start=1
                     /product="USP6 N-terminal-like protein"
                     /protein_id="NP_001099590.1"
                     /db_xref="GeneID:291309"
                     /db_xref="RGD:1311786"
                     /translation="MNSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKV
                     TDRFGFLHEEELPYPNAAADRQKQLEIERTSKWLKMLKRWERYKNTEKFHRRIYKGIP
                     LQLRGEVWALLLEIPKMKEETRDLYSKLKHRARGCSPDIRQIDLDVNRTFRDHIMFRD
                     RYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQITALLLMYMNEEDAFWALVKLFSGPKH
                     AMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQHLDSQEIYTSFYTMKWFFQCFLDRT
                     PFRLNLRIWDIYIFEGERILTAMSYTILKLHRKHLMKLSMEELVEFLQETLAKDFFFE
                     DDFVIEQLQVSMTELKRAKLDLPEPGKEDEYPRKPLGQLPPEYTNHLSNGQRSVGRPS
                     PKISSRREDGSPHKAHEHSPAHHSRNGTPERVGQSRRKSVDEGSKNLKQEADFQRKPS
                     SGTQDNSKHYNHATANQNSNALSNIRKEFVPKWRKPSEASAIERTAKYAIEGRSHSVF
                     PALSVAVPSSAETRLSNSRQKMKAFDGGEGNRGSNASQYDNVPGSESEPGASAEEGPE
                     RTHPHSPRKHSEPSPSPSKVPNKFTFKVQPPSHVRYPSQPAGEDHRAAYPPSYSNPPV
                     YHGNSPKHIPTAHSGFASTQISLGPQVNPSRRPYGSSLSGDTSPEKSYGRLTPVLPSS
                     RIEVLPIDIGARGYGSSGSPKSGKFILPPVDYLPENRKWSEFSYTYRPEVHGQSWTQD
                     ATRSHLSNLPKYTAFPHIPLQDHGLPEVSVDSPVRYKTSPAVEEASPPGYPYAGPTPS
                     AHHYRNREGLSVQESVLL"
     exon            226..293
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            294..376
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            377..416
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            417..497
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            498..605
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            606..715
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            716..764
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            765..885
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            886..980
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1046
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            1047..1146
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            1147..1299
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
     exon            1300..5241
                     /gene="Usp6nl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgggagcctc ctggaaggga aacaatgggg cggagggcac tgcggtagcc gccgccgccg
       61 ccgccgccgc cgcgccggac cctgtcggcc tcccgcgact ggccgccgtc gccgctgctg
      121 ggaccgtttg gagaacagga tatgcattcc tctgagaagc cctggacagc agagtctggt
      181 ttggtgctgg gtcgggacag cgcaccgaga cttttgcagt catgaattcg gaccaggatg
      241 tagcgctcaa actcgctcag gaacgagctg aaatagttgc taaatatgac agaggacggg
      301 aaggtgcaga gatcgagccc tgggaagatg ctgattatct tgtttacaaa gtcaccgata
      361 gatttggctt tttacatgag gaggagctcc cgtatcctaa cgcagccgcg gaccggcaaa
      421 agcaactgga aatcgaaagg acttccaagt ggctgaaaat gctgaagaga tgggagagat
      481 acaagaacac tgagaagttc catcgacgaa tttacaaagg aattccactc cagctccgag
      541 gtgaagtctg ggcccttctt cttgagatcc ctaaaatgaa agaagaaaca agagacctct
      601 atagtaaatt aaagcacaga gcacggggtt gttcgcctga tatcagacaa atagaccttg
      661 acgtgaaccg cacattcagg gaccatatca tgtttagaga cagatatggt gtcaagcagc
      721 aatccttgtt ccacgttctt gctgcctact ccatctacaa tacggaggtc gggtactgtc
      781 aagggatgag tcagatcaca gctctgctcc tgatgtacat gaatgaggag gacgccttct
      841 gggccctggt caagctcttc tcaggcccca agcacgccat gcatggtttt tttgtccaag
      901 gtttccctaa actcttgaga tttcaagaac atcatgagaa aattctgaac aaatttttgt
      961 ccaaactaaa gcagcacttg gattctcaag aaatctatac aagtttttac acaatgaagt
     1021 ggttttttca gtgtttcctt gaccgaactc ccttcaggct gaacctccgg atctgggaca
     1081 tctacatctt tgagggagag cgaattctca ctgctatgtc ttatacaatc ttgaagctac
     1141 acagaaagca tctaatgaag ttgtctatgg aagaacttgt agaatttctt caggagactc
     1201 tcgccaagga ctttttcttc gaggatgatt tcgtaataga gcaactgcag gtctctatga
     1261 cagagttaaa gcgggccaag ttagatctcc cagaacctgg taaggaggat gaatacccaa
     1321 ggaaacccct ggggcagctc ccacctgagt ataccaatca cttgagcaat ggacaaagaa
     1381 gtgttggcag gcccagcccc aaaataagca gcaggagaga agatgggtcg cctcacaagg
     1441 cacatgagca ctctcctgcc catcacagca gaaatggcac cccagaaaga gtcgggcagt
     1501 caagacgcaa gtctgtggat gagggtagta aaaatctgaa gcaggaggca gattttcaga
     1561 gaaaaccttc atcgggcaca caggacaact ccaagcatta taaccatgca actgctaacc
     1621 aaaatagcaa tgcactttcc aacatcagga aggagttcgt gcccaaatgg aggaagccat
     1681 cggaggcctc agctatcgaa agaactgcta aatacgccat tgaaggcaga agtcactcag
     1741 tgtttcccgc tctctctgtc gcagtcccaa gttctgctga gacccgattg tcaaactcaa
     1801 ggcaaaagat gaaggctttt gatggtggtg aggggaaccg gggttctaat gcttcccagt
     1861 atgacaacgt acctgggagt gagagcgagc ctggagcgtc tgcagaggag ggaccggagc
     1921 ggactcaccc tcacagtcca aggaagcact ctgagccaag tcccagtcca tcaaaagtac
     1981 ccaacaagtt tacctttaaa gtgcagcctc ccagccatgt acgataccca tcccagccag
     2041 caggggagga tcacagagct gcatatccac cctcctacag caacccgcct gtctaccatg
     2101 gaaattctcc aaaacacatc cctacggccc acagtggctt tgcgtccaca cagatcagcc
     2161 tggggcctca agtgaaccct tccaggagac cttacggttc ctctctttca ggtgacactt
     2221 ctccagagaa gtcctacggc cgcctaactc ctgttcttcc ctctagtcga attgaagtcc
     2281 ttcccataga cattggtgcc aggggatacg gcagttcagg gtcaccaaag agcggaaagt
     2341 tcatccttcc cccggtggac tatttgcctg agaacagaaa atggtcagaa tttagttaca
     2401 catacagacc tgaggtgcat ggtcagtcat ggactcagga tgctacccgt agccacttaa
     2461 gcaatttacc aaaatacaca gcctttccgc acatacctct tcaggaccac ggccttccag
     2521 aagtgtctgt agacagtcca gtgaggtata agacttcacc agctgtggaa gaggccagtc
     2581 ctcctgggta tccatacgca gggcccacac cttcagcaca tcactacaga aatcgagagg
     2641 gcctgtctgt tcaggaatca gtgttgctat gagaattttc tgtattcact gacaacaggg
     2701 gaatagaaac catatgatgc ccgtgtttat aattgccaaa gcagtattgt ttatattgta
     2761 aacaacttgt gcagctcagt gtgtgtcagt aaggagagtg tggggtgctt ccctccgtgt
     2821 agaggccact gaagaagagc gattcgtttg cgtcctggct gaacgtctga gagtgacctg
     2881 gaaacacggc caggttctct atgctcttcc ctttgtgtct ccccctcact cccggtctgt
     2941 tctgactact gtcagaaagc actgagacac tgtagaacac atcctctgag ggctgtccct
     3001 cgactctgac tagatgaggc aaacacctgt gcacatagat tttgtttttt aaaaaaccac
     3061 ctttaatcta gatccatgga ataactgttt tttttttttt accccttatc ttttggccca
     3121 ccccacctgg acatatttta acctatgttc taaactaaaa ctaactaaag tttatccgac
     3181 tttatgaatc cagcgccttt cagaatgtca ttctccttca ggtgctgcca ttttctcagc
     3241 tcctgaaagt taaaggctgt ggagaaaggc tcaccactcg atggtgccta aagtggttca
     3301 gttagccaga gtgagcggct gcacagcgtt cactgtgtcc cctaaactcc aagtgtctcg
     3361 gtgctgccat gccctgggct ctggaccggc tgcagaggga cctggaagtc agaccttgca
     3421 gtgccgtagg cggtgggcag ttccttgtca cagtaaagca aggctgcatc tccctcacag
     3481 gcccagggca ccgtccgtcc gtccatccgc acggctttgt cacccaggct gcacagagtg
     3541 tagtaggtgg atgggtgctg cagcactcac tgggccatta catcgccctg atcaaaactg
     3601 tgaaatgccc taatgactga taagaatcta gagttttgat ctttgtaaaa aagaaaaaaa
     3661 agtagtttgt ttcatagttt tggaaatttc tttcaatgaa aaataatcga agttcatgtt
     3721 tttaaaaagg caatgattcc tttatgctgt cacacactac tgtcaccaag acactgacaa
     3781 agagcgggtt ctccaagaac catggctgtg tctccgtaga tgctcgccca ccattaccct
     3841 cttgtactct tgtaggaagg ccaacagtga cgctcccccg ccccacagcg ggacttaggc
     3901 ttttgaggta caagaatatg tcttcatgaa agtaacattg tttatctatc aaacgtgaca
     3961 atattttgat gtatataatg attctaatgt aatttaatta acggaatgat gtttttaagt
     4021 gtggaagcaa atgcagtata ttaaaagtgg acaccacacc gacaccccct actcctgacc
     4081 aaataaccag gctcttgatt tagatcatgt ggaaggtgag aaataaatgt atgtagacat
     4141 gtagttgagg atcttacggt tcttagagta tgactctggg actcgtaagg agcaagctgt
     4201 acaatgtagt tcatgagggc agcatctgtg cctcttcaga aagtacatat ctagtggtaa
     4261 ataatgtaga ttatatatat atatatatat atatatatgc agtatatatg gacacactat
     4321 tttcttatgt catctatggc ctttttttat ctgtgtactt tttgatgtga ttgtttttaa
     4381 cacgctaaga gtaatccgtg tactttgttc tgcgtcttct gtgcagcttc ccagtggcag
     4441 gtgctgcacc ccggggctgg ccgggcccgc agatgtgcca ccagcagatc ttacacacgc
     4501 tcagctctct gcttgcattc cagtgagacc gtgtttagaa ccacgtcgcc tttccttggc
     4561 ttaagcgttt ctaatggcag caaagtcttc ccctccataa gatgtacctc tgttggcttt
     4621 cagtaggaga ttttaattta aaattatttt gccactatac aattttattt taaatttatt
     4681 tttaaataaa agaaatgata agagaaataa cactgacaaa gtgattcaaa atatatttat
     4741 agaaaacgtt tgctgagggc attccaggca gagcagccag tcaggttcca taactgcacg
     4801 cccacagtgt gcttgccctg gctgcgtctc ccctcatggt atcttggccc acttttgtca
     4861 aaagtaaaca tttgggtgtg gtatcgtaag tttcttcaga aggagtcttg ctggtcttta
     4921 cgtaactagt gaacttaagg ttgtttgggg ttttgttttt gtttttgttt tggtgtgtga
     4981 ttggttggtt tgcttgtttg tttgtttgct ttgctttgct tttaattctc aagtctcgcc
     5041 cttataccac ctaaatctta tcttgggtaa aacacaagga ggcatattcc ccgtgtctaa
     5101 tgctgtcctc ttgagactct ttctaacaaa gatgccccaa gttgtcttat gttcctgttg
     5161 tgggatgttt acaaacggtt tgttgttatt ttggtttctg aagatggagt cttgcatatg
     5221 tcctgcctga tcttaccgtg t
//
