LOCUS       XM_039099797            4549 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 51
            (Usp51), transcript variant X2, mRNA.
ACCESSION   XM_039099797
VERSION     XM_039099797.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099797.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4549
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4549
                     /gene="Usp51"
                     /gene_synonym="RGD1562211"
                     /note="ubiquitin specific peptidase 51; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 5 ESTs, 12 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:317398"
                     /db_xref="RGD:1562211"
     CDS             431..2521
                     /gene="Usp51"
                     /gene_synonym="RGD1562211"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 51 isoform
                     X1"
                     /protein_id="XP_038955725.1"
                     /db_xref="GeneID:317398"
                     /db_xref="RGD:1562211"
                     /translation="MAHVREASRSSRSVACWSSGGGRGACLEQAAENASRMEQTMRGT
                     QGAQEMKPELWPEPKPTSENLTSRGSGSDEKVLPSIPAACHTSSSSVCPRRKPRPRPQ
                     PRSRSRGGRGLKAPPPPPAKPPPPPPAPPPPPLPKPRPVAWRNSRRRPRPAPRPQTRK
                     SYPSDPGCSGDSDGTENRLLEVGFDKGPTGCSHVEIFKVAKNWRRNLRMIYQRFIWSG
                     TPETRKRKAKTCICRVCSTHKNRLHSCLSCVFFGCFTEKHIHIHAETKQHNLAVDLYH
                     GVIYCFMCKDYVYDKDIEKIAKETKEKILGLLMSTAGDMSYQQLMASEVEENQSICES
                     KEQETSLVKPKKKRRKKTVYYTVGLRGLINLGNTCFMNCIVQALTRIPLLKEFFLSDK
                     HKCMMTSPSLCLVCEMSSLFQAMYSGNQSPHIPYKLLHLIWIHAEHLAGYRQQDAHEF
                     LIAILDVLHRHSRDDGIEQEGNLNHCNCIIDYIFTGGLQSDVTCQVCHGVSTTIDPCW
                     DISLDLPVSYTPGRAGSTGQKPRVISLTDCLKWFTRPEDLGSSAKIKCSRCQSYQQST
                     KQLTMKKLPIVACFHLKRFEHLGKQRRKINTFISFPLELDMTPFLASTKESIMKGQPL
                     TECVPIENKYSLFAVINHHGTLESGHYTSFVRQEKDQWFSCDDAVVTKATMEELLYSE
                     GYLLFYHRQDIEKE"
ORIGIN      
        1 aaaggtgggt gccctctctg ttcctttggg ctcccctttc atactactta actgtgtttt
       61 tatttagtca actcgggatt ttgagactga aatgtgattt agacccttct aggacccatt
      121 caggagctac tggcatctct cctaattgtt ttgtaactat atgtgttaat actctggagg
      181 tatcttggtg aaagacttct gggatctgga aagtttttgg gggacagcgg tgccattcat
      241 ccctgttgga ggcctgattc cggggctggg ggcccatacg tggagagggg aggggccagg
      301 gggcggcccc cttgtgacca gccctgaaga gaggtcagag agaagactgg cagaggagcg
      361 cctggacagc agcagcagct gactttctag atcaagcgcg ccttggggcc ccaggcttgg
      421 gagtgagccg atggcccacg ttcgagaagc gtcccggtcc tcccgctccg tcgcctgttg
      481 gagttcggga ggtggtcgag gagcctgttt ggagcaggcg gctgagaatg catcgagaat
      541 ggagcagacg atgcggggta cacagggagc ccaggagatg aagccggagc tgtggccgga
      601 gcccaagccc acgtcggaga acttaacaag taggggcagt ggcagcgatg agaaggtgct
      661 cccttctatc ccggctgctt gtcacaccag ctccagctcg gtttgcccgc gccgcaagcc
      721 ccgccctcgg ccccagccca ggtcccgctc caggggaggg cgtgggctca aggccccacc
      781 cccgcctccc gccaaacctc cgcctccccc gccagcgccg ccgccaccac ccctgcccaa
      841 gccgcggccg gtggcctggc gcaattccag gcgtagaccc aggcctgcac ccagacccca
      901 aacacggaaa agctacccta gtgacccagg ctgctctggg gactcagatg gcacagagaa
      961 caggttactg gaggtagggt ttgataaggg tcccacaggc tgctctcatg tagagatctt
     1021 taaagtagct aaaaactggc ggaggaacct gcggatgatc tatcagcgtt tcatttggag
     1081 tggaaccccg gagactagga agcgtaaggc aaagacatgc atctgtcgtg tatgtagtac
     1141 gcataagaac agactccact cttgtctgtc ctgtgtattt ttcggatgct ttactgagaa
     1201 acatattcat attcatgcag aaactaagca acacaattta gcagtagacc tctaccatgg
     1261 ggttatatat tgctttatgt gtaaggatta tgtatatgac aaagatatag aaaagattgc
     1321 caaagaaaca aaagagaaaa ttctgggact cttaatgtcc actgcaggag atatgtctta
     1381 tcagcaacta atggcatctg aggttgaaga aaatcaatca atctgtgagt ccaaagaaca
     1441 ggagaccagt ttggtaaaac ccaagaaaaa gaggaggaag aagacagtgt attatactgt
     1501 aggcctcaga gggttaatta atcttgggaa tacttgcttt atgaactgta ttgtccaggc
     1561 acttacccgc attccactac tgaaggagtt cttcctttcg gataagcaca aatgcatgat
     1621 gacaagcccc agcttgtgtt tggtctgtga gatgtcttca ctttttcaag ctatgtactc
     1681 ggggaaccaa agtcctcata ttccctataa attgcttcac ctgatatgga tccatgcaga
     1741 gcatctagct gggtacaggc aacaggatgc tcatgagttt ctgattgcaa tattagatgt
     1801 gttgcataga cacagcagag atgatggcat cgagcaagaa ggtaacctca accactgtaa
     1861 ctgcatcata gactacatct ttacaggtgg cctgcagtcc gatgtcacct gtcaagtctg
     1921 tcatggtgtc tccaccacta tagacccatg ctgggacatt agtctggact tgcctgtctc
     1981 ttatacccca gggagggctg gcagcacagg ccagaagcca cgagtcatct cacttacaga
     2041 ttgcctgaag tggtttacaa ggcccgaaga cctgggaagc agtgccaaaa tcaaatgcag
     2101 tcgatgccaa agctaccagc aatctaccaa acagctcaca atgaagaaat taccgattgt
     2161 ggcctgcttt catctgaaac ggtttgaaca tttaggcaaa cagagacgca agattaatac
     2221 ttttatctca tttcctttgg agctagacat gacacccttt ttggcctcta ctaaagaaag
     2281 cataatgaaa ggccagccat taacggagtg tgtgccaatt gagaataaat attctttgtt
     2341 tgcagtgatt aaccaccatg gtactttgga aagtggccat tacaccagct ttgtccgtca
     2401 ggaaaaggac cagtggttca gctgcgatga tgctgtagtc actaaggcta caatggagga
     2461 gttactctat agtgaagggt atctactgtt ctatcacagg caagatatag agaaagaata
     2521 atcttaccca gaatgataca atttccagac caaaatttta aaaagttaaa caaaaaaaga
     2581 aaaacaaaaa aacaaaaaaa aaaaacaaaa aaaaaaaaca aaaaagaaga aaaagaagaa
     2641 aaaataataa aagtaagaaa aaaacaaaaa aaagagtaag gatcctgaag agactcacaa
     2701 cacaagccta cctggaatgg acaattgtaa atgccattac atcaacaaac acctcttaaa
     2761 gaaacacaca aatctacctg gagtggataa tgaccatata taataagtga cactttggca
     2821 taaaggaact attttaccct gtcccataag tctatgggaa gacattgaat tttcaatcag
     2881 tgaccattag ccttaagaac tggggggtca gagggagggg aggagaggag aggttgaaaa
     2941 gggtcacata aagcaaatta cacgaagtct cagcatggag agagggggat cttctcaaat
     3001 tacattttat ttcttcaaag atattatgtt aagtgggggg tatattttaa gaaaggaatt
     3061 tttcattgta gttatagttt taagtgcaaa agaagtctgg aaaaaaccaa atattttaaa
     3121 caaaaaactt taaagcttta aaaagaaaac cattaagaaa tacttttgaa ggatttaaga
     3181 gaacatttta aatgttaaaa agttaagtta agtattttag aagaaatatt tttaaatgtt
     3241 ttttaattta aaatgattcc aaattgttag tatgtgaaaa tagagtattt agaaattttt
     3301 acaatttaag atgaaagatg aacatttata aaatagtgaa agaaaacact aacttaaaaa
     3361 cagcagaggt aaatcttaga aactgaaaac atttggattc taaatattta aaacataaaa
     3421 atatatgcat tggaataacc aaaatttaca aaaaagtata cctataataa ttttaaaagt
     3481 aaaatttcaa ggtatataga ataaaatgaa atttcaagtt aaattcagga agggtggttt
     3541 aaaagaagca agtttagaac ccttcaagga aacagctaat tggttttaaa gatttcaaat
     3601 tcttttaaat attaagagag aacctgtaaa ttcaactgca gagatttcac tataaaaaca
     3661 aactttaagt ttaaaaacaa tattctcata caaattgaca cctgaaaaaa aatgtaaata
     3721 agatcgtatt tgaaaggtga aagttttatt ttgtaattaa gcacattgaa atatagatgg
     3781 atataagata taaaccatag agaatgagaa gacagatggt ttgggaacta tgtatttttt
     3841 taatcttatg tccgttgcag ataactctat tggaaaaaag taatgccatc aagatttctc
     3901 ccatttagaa ctcattatcc atatacatct ttagcttctg aaagaaggct tttaataatt
     3961 ttgtggctta gagaaattag atcataactg tgaagttttg gcttttggtg ttttagcccc
     4021 atggtctgac agagaaagtg gcagggaccc ttaactgaat aaactcccac cctttctgct
     4081 ttcagtcttt tgcctcgtgg ggagacaaga tattttaatt tctacagtag aactctgagt
     4141 ttgtgtttaa cagtcctgca aattccttgt cctgcaaatt ccttatcctt cttcatgccc
     4201 acccacccat tcttctttcc ctgtatccca cacttccctg gccttatccc agcctgcaag
     4261 gatcctttct tagtgtatat ctggtgactt cattccttca agactaactc acagatgact
     4321 tctctggagc tatccctgga tccccaatgc aggctttaat tagatagtcc ccatccccat
     4381 ctctcctact gtgcctccaa agtacttcgt ctatacctcg atgaatagta cttattcgac
     4441 tgtgattcta ctgtagcatt gtgattgtct acctctctgc accagaccct gagagcagag
     4501 ggacaagcct tattcactct tgcgttaata aatgttattg aatgcaaaa
//
