LOCUS       XM_006234940            1474 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 50
            (Usp50), transcript variant X2, mRNA.
ACCESSION   XM_006234940
VERSION     XM_006234940.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006234940.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1474
                     /gene="Usp50"
                     /note="ubiquitin specific peptidase 50; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:311399"
                     /db_xref="RGD:1564751"
     CDS             435..1442
                     /gene="Usp50"
                     /codon_start=1
                     /product="inactive ubiquitin carboxyl-terminal hydrolase
                     50 isoform X2"
                     /protein_id="XP_006235002.1"
                     /db_xref="GeneID:311399"
                     /db_xref="RGD:1564751"
                     /translation="MNAILQCLCSTSPLVEYFLSGKYITALQKDCSEVTTAFAYLMTD
                     MWLGDSDCVSPEIFLSAVGSLYPAFLKKTQQDAQEFLIYVLNELHEALKKHCRGRASE
                     KRTAQNCCRKVPAHETSIITRLFEGQLSYSITCLKCETCTYKNEVFTILSLPIPSEYE
                     CSLQDCLQCFFQQDTLTWNNQIHCSFCEIKQETAVRTTISKAPKIIVLHLKRFDIQGA
                     VKKKLRTDIHYPLTNLDLTPYICPVFRKHPKYNLCAVVNHFGDLDGGHYTAFCKNSVT
                     QAWYSFDDTRVSEIPDTSVQTATAYLLFYSCQPFSIPTQKRKSWDSTPDYGKPAVRKW
                     P"
ORIGIN      
        1 tgtgatgcag gggaggaccc aagaggaacc aggcttgagt tcagtgaagt cagaaaagta
       61 gggaaaagtg gaaagtagag aaaaaggggg aaggcgttca aactgttcaa aaacaaaaac
      121 aagccagggg aacagttttg gagaaatgaa gttaaaaggc tcacagttag cttgtgagta
      181 gaagtgaaag cccgatgtgc tcccaggaac atggcgtctc atcggccgtt ccctgcagat
      241 gacttcggtg cctactacat cctaggttgc cagggcctga ctggtactag cactcactct
      301 tccctggaaa cactctcctt ccatgtggcc cacacagtgc ggagtgtgca gactatgact
      361 cccttccgga gtctgagacc cagccacact tccagggcgt gacgggactg cggaacctgg
      421 gcaacacctg ctacatgaac gccatcttgc agtgcctctg cagcacatct ccactggtgg
      481 agtacttcct gtccggaaag tacatcacgg ctcttcagaa ggactgcagc gaggtcacca
      541 cggcctttgc ctacctgatg acagacatgt ggcttggcga ctcagactgt gtctccccag
      601 agatatttct gtcggctgtt ggcagccttt acccagcctt tctgaaaaag acacagcaag
      661 atgcgcagga gttcctgatt tacgtcctca acgagcttca tgaagctttg aaaaagcact
      721 gccgaggaag agcgagtgag aaaagaacag cccaaaactg ctgcaggaaa gtgccagccc
      781 atgagacctc aatcatcacc cggctgtttg aagggcagct cagttacagc atcacgtgtt
      841 taaagtgtga gacctgcacc tacaagaacg aagttttcac catcctttcc ctccccatcc
      901 catcggaata cgaatgctcc ctccaggact gtctccagtg ttttttccaa caagacacac
      961 tgacctggaa caaccaaatc cattgttcct tttgtgaaat caagcaagaa acagctgtga
     1021 ggaccactat ttccaaggca ccaaaaataa ttgttcttca cttaaaaagg tttgacatcc
     1081 agggtgcagt aaagaagaag ctgaggacag atattcatta cccactgacc aacctggacc
     1141 tcactcctta tatctgtcca gtcttccgga aacatcccaa gtacaacctg tgtgcagttg
     1201 tgaaccactt tggagatctg gatggtggcc actacactgc cttctgcaag aactcagtaa
     1261 ctcaggcctg gtatagtttt gacgacaccc gagtcagtga gattccagat acttctgttc
     1321 aaacagccac agcttatctt ttattctata gctgccagcc tttttctatc ccaacacaga
     1381 agcgcaagag ctgggacagc actcctgatt acggcaagcc agccgtcagg aagtggccgt
     1441 gaatatgctt tgttattaaa tccttcccac ctac
//
