LOCUS       XM_003749567            1401 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 50
            (Usp50), transcript variant X1, mRNA.
ACCESSION   XM_003749567
VERSION     XM_003749567.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003749567.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003749567.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1401
                     /gene="Usp50"
                     /note="ubiquitin specific peptidase 50; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:311399"
                     /db_xref="RGD:1564751"
     CDS             212..1369
                     /gene="Usp50"
                     /codon_start=1
                     /product="inactive ubiquitin carboxyl-terminal hydrolase
                     50 isoform X1"
                     /protein_id="XP_003749615.1"
                     /db_xref="GeneID:311399"
                     /db_xref="RGD:1564751"
                     /translation="MASHRPFPADDFGAYYILAECADYDSLPESETQPHFQGVTGLRN
                     LGNTCYMNAILQCLCSTSPLVEYFLSGKYITALQKDCSEVTTAFAYLMTDMWLGDSDC
                     VSPEIFLSAVGSLYPAFLKKTQQDAQEFLIYVLNELHEALKKHCRGRASEKRTAQNCC
                     RKVPAHETSIITRLFEGQLSYSITCLKCETCTYKNEVFTILSLPIPSEYECSLQDCLQ
                     CFFQQDTLTWNNQIHCSFCEIKQETAVRTTISKAPKIIVLHLKRFDIQGAVKKKLRTD
                     IHYPLTNLDLTPYICPVFRKHPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQAWYSFDD
                     TRVSEIPDTSVQTATAYLLFYSCQPFSIPTQKRKSWDSTPDYGKPAVRKWP"
ORIGIN      
        1 ttgtgatgca ggggaggacc caagaggaac caggcttgag ttcagtgaag tcagaaaagt
       61 agggaaaagt ggaaagtaga gaaaaagggg gaaggcgttc aaactgttca aaaacaaaaa
      121 caagccaggg gaacagtttt ggagaaatga agttaaaagg ctcacagtta gcttgtgagt
      181 agaagtgaaa gcccgatgtg ctcccaggaa catggcgtct catcggccgt tccctgcaga
      241 tgacttcggt gcctactaca tccttgcgga gtgtgcagac tatgactccc ttccggagtc
      301 tgagacccag ccacacttcc agggcgtgac gggactgcgg aacctgggca acacctgcta
      361 catgaacgcc atcttgcagt gcctctgcag cacatctcca ctggtggagt acttcctgtc
      421 cggaaagtac atcacggctc ttcagaagga ctgcagcgag gtcaccacgg cctttgccta
      481 cctgatgaca gacatgtggc ttggcgactc agactgtgtc tccccagaga tatttctgtc
      541 ggctgttggc agcctttacc cagcctttct gaaaaagaca cagcaagatg cgcaggagtt
      601 cctgatttac gtcctcaacg agcttcatga agctttgaaa aagcactgcc gaggaagagc
      661 gagtgagaaa agaacagccc aaaactgctg caggaaagtg ccagcccatg agacctcaat
      721 catcacccgg ctgtttgaag ggcagctcag ttacagcatc acgtgtttaa agtgtgagac
      781 ctgcacctac aagaacgaag ttttcaccat cctttccctc cccatcccat cggaatacga
      841 atgctccctc caggactgtc tccagtgttt tttccaacaa gacacactga cctggaacaa
      901 ccaaatccat tgttcctttt gtgaaatcaa gcaagaaaca gctgtgagga ccactatttc
      961 caaggcacca aaaataattg ttcttcactt aaaaaggttt gacatccagg gtgcagtaaa
     1021 gaagaagctg aggacagata ttcattaccc actgaccaac ctggacctca ctccttatat
     1081 ctgtccagtc ttccggaaac atcccaagta caacctgtgt gcagttgtga accactttgg
     1141 agatctggat ggtggccact acactgcctt ctgcaagaac tcagtaactc aggcctggta
     1201 tagttttgac gacacccgag tcagtgagat tccagatact tctgttcaaa cagccacagc
     1261 ttatctttta ttctatagct gccagccttt ttctatccca acacagaagc gcaagagctg
     1321 ggacagcact cctgattacg gcaagccagc cgtcaggaag tggccgtgaa tatgctttgt
     1381 tattaaatcc ttcccaccta c
//
