LOCUS       XM_039109813            7908 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 45
            (Usp45), transcript variant X6, mRNA.
ACCESSION   XM_039109813
VERSION     XM_039109813.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109813.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7908
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7908
                     /gene="Usp45"
                     /note="ubiquitin specific peptidase 45; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 18 ESTs, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 90 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:313098"
                     /db_xref="RGD:1310976"
     CDS             196..1896
                     /gene="Usp45"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 45 isoform
                     X4"
                     /protein_id="XP_038965741.1"
                     /db_xref="GeneID:313098"
                     /db_xref="RGD:1310976"
                     /translation="MAPNSRFLFRQLHSCMKEAEKGPLSPKVLFNQLCQKAPRFKGFQ
                     QQDSQELLHHLLDAVRTEETKRIQASILKAFNNPTTKTADEETRKKVKAYGKEGVKMN
                     FIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERVSKPVLLGKMSKCRSLQE
                     TDQDHNKGTVTVENTHPPRAAKKHSSPKDKTLLSHDRKHLRKWPSEEERTVGTHPNSE
                     NSEASPLAGILSNEASLNESPTEGSERDTSLESSVDADSEASEPEVAYKPSVLLRSSG
                     DPGAHGEQHPHLPLASELPHTKETHDCDEEMAEAMAELHLSGTVTGNRDFHREKQPLN
                     VPNNVCFSEGKHTKLHSAQNAFQTLSQSYVTTSKECSVQSCLYQFTSMELLMGNNKLL
                     CEDCTEKKRKCQKETSSAERKAGGVYTNARKQLLISAVPAILILHLKRFHQAGLSLRK
                     VNRHVDFPLTLDLAPFCAATCKNISVGEKVLYGLYGIVEHSGSMRGGHYTAYVKVRVP
                     SRKLSECITGRKTAPGLKEADSELGGHWVHVSDTYVQVVPESRALSAQAYLLFYERIL
                     "
ORIGIN      
        1 atgcattttc tagaatcata aaactttgtg aagaaaaacg tgaagcaggg gaaataaaga
       61 aggggaagaa aggctgtgct gtgccatctg tcaaaggaat tacaaactta ggaaatactt
      121 gcttttttaa tgccgtcatc cagaacttgg ctcagactta cattcttttt gaactgatga
      181 acgagataaa agaagatggc accaaattca agatttctct ttcgtcagct ccacagctgc
      241 atgaaggaag ctgaaaaagg accactttct cctaaagttc ttttcaatca gctctgtcag
      301 aaggctcctc gatttaaagg tttccagcaa caggacagcc aggagcttct gcaccatttg
      361 ttggatgcag tgaggacaga ggagacaaag aggatacaag ctagcattct aaaagcgttc
      421 aacaatccaa ctaccaagac tgctgatgag gaaactagaa aaaaagtcaa agcctatgga
      481 aaggaaggcg tgaagatgaa cttcatagat cggatcttca ttggcgaatt aactagcaca
      541 gtcatgtgtg aagaatgtgc taacatctct accatgaagg atcccttcat agatatttca
      601 cttcctatca tagaagaaag ggtttcaaaa cctgtacttt tggggaaaat gagtaaatgc
      661 agaagtttac aggaaacaga ccaagatcat aacaagggca ccgttacagt agaaaatacc
      721 catccaccaa gagctgccaa gaagcattcc tcacctaaag ataagactct gctaagtcat
      781 gacagaaaac atttaagaaa atggccgtct gaagaagaga gaactgttgg tacacatccg
      841 aacagtgaaa actcggaagc cagccctttg gccggcatcc tcagcaatga ggcatcgctg
      901 aacgaaagcc ccactgaggg cagtgagaga gacaccagcc tagaaagcag tgtggatgcg
      961 gacagcgagg cttctgaacc cgaggtggct tacaagccgt ctgtgctgct ccgatccagt
     1021 ggtgatcccg gcgcgcacgg ggaacagcac ccacacctcc cactggcaag tgaattgcca
     1081 cacaccaagg agacgcacga ctgcgatgag gaaatggcgg aagcgatggc tgagcttcat
     1141 ttgagcggca ctgtaactgg aaatagagat tttcacaggg aaaaacagcc actaaatgtc
     1201 ccaaataatg tgtgtttttc agagggaaaa catacgaagc ttcacagtgc ccaaaatgct
     1261 tttcagactc tttctcagag ctatgtaact acttctaaag aatgctcagt tcagtcctgt
     1321 ctctaccagt tcacatccat ggagttacta atgggcaaca acaagctgct ctgtgaggac
     1381 tgcactgaaa agaaacggaa gtgccaaaag gaaaccagtt ctgcagaaag gaaggcagga
     1441 ggagtttata ctaatgccag gaagcaacta ctcatatctg ctgttccagc tatcctaatc
     1501 cttcatctta aaaggttcca ccaggctggc ttgagtcttc gtaaagtaaa cagacatgta
     1561 gacttcccgc ttacccttga cttagcaccg ttctgtgctg ctacctgtaa gaatataagt
     1621 gtgggggaga aggttctcta tggtctctac ggtatagtgg agcacagcgg ctcaatgaga
     1681 ggaggccact acactgctta cgtgaaggtg cgagtgccct ccaggaagct gtccgagtgc
     1741 atcaccggga ggaagactgc accaggtttg aaagaagctg atagtgaatt gggaggccac
     1801 tgggtccatg tcagcgacac ttatgtgcaa gtggttccag aatcaagagc actgagtgcg
     1861 caagcttatc tcctttttta tgaaagaata ttataattat ctgttaattg ttatttagtt
     1921 catttttatt ttaatgctga agtcgtaact gtaatatgta atgtgccttt gtagtctgta
     1981 gaaatagtgc gtccttccag tgttacttaa ctttgtcgat atgcagtgaa tcctttaaag
     2041 aaattaatta atgtgacagg cagttgtggt gctcgccttt attccagcac ttggaaggca
     2101 gaggcaggca gatctgtgaa aaaccttgtc ttgaaaaata aaacaaaaaa gtaattaatg
     2161 ctttcaaatc tatattctta agtgtagaaa catgttttat gttaattttc atgtccatgg
     2221 agattgccac tcaccaccaa aaaaaaaaag aaaagaaaga aaaagttgat ggtagtggag
     2281 agatcccctt cgcgacgtga ctcgtcacta cagacattca gagacgatgc tggatcgggt
     2341 ctctagtgga tccttctcga gtggacgcag tgtatcttgt gcttactttt gttttagcct
     2401 tttacaatct cggccctgtt ttgaatcact cttcacattt ctctgtgcgt gtcatttttc
     2461 tagtaaacat tggtgtaagt ttataactat gaaagaaaaa ttgcccatcc ttgcaccacc
     2521 ccacttaaaa tcatctcagg gctttgcagt ggttggtgtg tgtgttagtc gatgggaaaa
     2581 gtttctagaa cagtctgaac tagtgcctaa tgtaacataa taattttttc atattttatg
     2641 tgactcagta gtatgaaaag gaaccattgt aattttggta ctgtgagttt acaagtaata
     2701 aattgattcg cttatcgcct tgaatatttg aagatattga gacatttcat aaactaatca
     2761 tttgcaatcc tttaaagaca gtttgcaagt gattggttaa ggccaaaata aaaatataga
     2821 gaattttgac acatagaact agcatataga agttggtggt ctatatagga acataggata
     2881 ctttaaagtt taaggatgtc tttgaactat aaactaccaa actatattta tgagtggtag
     2941 aaatcatatt cttataatta acaacaaata taatactttt tttacttctg tacattaata
     3001 aatgttaaat atggttttgt cttcataagc attatttgaa aagacaggtg gctagttggg
     3061 gatgtagttc aatggcagag aacttgcttg gcctgtgtaa ggtcctggtt ccatccccag
     3121 acacacgaat aaaacattca ggtcaatttg gctttgactt taatggggca cagagctgct
     3181 acttctgttc cctttaaata cgtagaaaca caggagagtt tctccttcca aaattcaaag
     3241 aattgaactg tgaaaactta gcatgaaaaa tattactacg aagattttaa ataatcaatg
     3301 aaatggttca gtgatacata gtattaaagc aagatgtaag ggaacgggtc cagcgtctta
     3361 gtcttcagtg cctgtgtttg attcaatggg caaatgtagg ggagagaggc tgtaagctgt
     3421 acagaccttt agccagcgtc gagccttctt ggcatgtgta acataaggtc accttatgat
     3481 gatgcctctt aatatgcggc ggctaggtga aactgatttg tctaatggag aaattttaaa
     3541 ataccatggc ataacttcta tttttaagtt gcagaggaat tttcaatagt attttaaaga
     3601 tttttttgta ttgaagataa agaactatat tttatctgta gagcccagtt gtgtcctcta
     3661 aaaagaactt tccagtgtct tctgtttcat cagacattca gagtttatta atctattgac
     3721 acgaaatagt ctagcaccag agcaatgagc tagaaaaatt tgctcaagtc ggcttctcat
     3781 tcatagcagt tgccccacca aacaaatgta aatagttaac ctttttttct ctctctccta
     3841 gaaaagatac tattaagagg tgtacagtct aggcaggttc caatacctgg catatgacag
     3901 tattttatca ccctttaaaa cagaaaaacc tgccgagggt ggtggtgcac gcctcagact
     3961 cagcactcgg gaggcagagg caggtgcatt tgagttccag ggcacccaag gctacacaga
     4021 gaaaccctgt ctcaaaacac ttgaagagaa aagaagcacc ctaaaatcta tatatgattt
     4081 ttatacatta tcctagtagt gacgtgcaga taaaatgttc atttattacc tagtgctaag
     4141 gagattctga aatgcatttt tatgacctaa agtttgtttt ttcttgccat ctaaaaatgg
     4201 agaaaaatgg tttgattttg atacctagga gtttcctatc aagcttatgt tgtagataaa
     4261 aatcacacag atgtacactt aaatttttgt tcttattttg aagttttcca aagcacattt
     4321 gtagaaattt taaattgcga ggctactgta ctaacaatag tttccagatt acctcaggaa
     4381 acagtgcaaa taaacaagaa tgtttacaga tcaacaaaac tactcggtgt tttggcacag
     4441 tgaatttgaa aggtaaaaga gagaagtttt tatccagaaa ctggtttaca gggtaaaccc
     4501 aattctcccc tggctctccc gtatttaaaa tgatgtgcca attatgtgaa tgtttgtgac
     4561 ataaacaaat gtacatctat atttaagatt tattgtttaa tgttttaaaa aataatatga
     4621 agactgcttc tgtaggtagt caaggagatg atcatcgtag cagctcagag tcgtatatca
     4681 acagagctat tttaccatat ctaataatcc ttagcttgca tgtgtgattc attagtgatt
     4741 ttatacagta gttgaataaa attttctgaa gacttagctg tgaaatgtca ccgcacatca
     4801 aattttttag tacacaatag catcctgcct actttcatga actttatact cagcatattt
     4861 ttctgcatga catctggtcc aataaacctt aaccaagtct gtgcactaaa accaagcttt
     4921 cagagagcat ccattgcatt attggagaaa ttatttctgt actaaactgg ttttgttcat
     4981 gtagaaatca tcagttcaac tgtgtttaaa agatgattat ttttgggtat caataataaa
     5041 ttcctagtat cattccttct cttttatcca attttacagt attttaaaaa tatctatgta
     5101 acttattgat cattatttgg ccattgctgt atatataaac atcctaataa atatgaaatt
     5161 cttatgttag cagattaggc ctggagcttt gcattataca ttattgacag gatattaata
     5221 aacattgtgt tcatatctat tttagtcccc tggctttcta taaacaaaat ataatttaag
     5281 aagcttatga acaacaaaaa tttatttcct ttacttttag caaccaggaa gctcaagaca
     5341 aagacaaaca gatccatttt ccaaatgagg ctctggtgat cctctctgag cgttcacctg
     5401 gttactaggg aaagggagca gtagggtcgc ctttatgagg gcttcacgtc agaacctaat
     5461 cactttctaa atactccagt cacagaactc tcacctgggg agcttgcgaa tgggacacaa
     5521 acatttagct cacagtgacc ttcaagtttc aggaatgcgc tatttaaaaa aaaaccttgt
     5581 caccaacccg atgctggaga ttgtatctag tagttcttcc acccagctac attctcagtc
     5641 cagaaaccaa acagacctgt cagctatttc cctgaaaggt ttgagttact tagataggat
     5701 tgtacactaa gaaatatgtt gtctacatgt ctgcttcttt aactttttta gagccatgaa
     5761 gcttccagag attttgagga aagttagata tttttctttt agagtgtata aagatgggtt
     5821 tattgctctt gggcaggttc tgatcccaag agtgaggcca gggaagttgc catagggagg
     5881 gagacagaag ggaggtagat gagaaagaga aagagtgtgt gcattcaggg aaaggaaaag
     5941 cacagaagga gaggggtagg gggagaggga gaaagttaca tacttaacat ttttatttga
     6001 tcatttaaca agtgtttgtt gaatacctgc tctttgcttg gcattaggga tatagcagtg
     6061 aatgcaagaa atcactcaag aagaagactg tcaagtgagt gtactggtct tcgtttcagt
     6121 ttcttttgct gtgatgaaac atcataacca caagcaacta ggagaggaga aggtttattt
     6181 catttacatt tgcatatcac agagggagtg ggggcaggat gtgatgcaga ggctggggag
     6241 tgctgcttac tggcttactc tccatgttgt ctccagttgg ctttctaaag aaccaaagtc
     6301 caggccaggg gtagcatcac tcacaatgct ctggaacctt ccacatcaat cacttatttg
     6361 acagtgccca aaagacttgc ctagagcccc atctaataga ggcattttct caattgaggc
     6421 tcctttctct cctctgaatc tagctgtgtc aagttgacat aaaactagct ggcacataag
     6481 gggaaaaaaa acccaaataa tactgcttac gtgctgttgg gagtaacacc tagcaaagaa
     6541 ggatgttcca gtgaggcaca gaacttatgg gatatctata tagtaagtat taagggaatt
     6601 tattgtaagg acttatagtc ttcagtccaa ctaacccaac agtgggcagc catgaatagg
     6661 aactccagga atctagtagt tgctcagtcc cacgaggctg gttgtttcag ctggaatcct
     6721 gtgtaaactg gaatcctaaa gaagtaggtt ccggcagatg tgctggcaag tagtgcacac
     6781 aggaaaagaa gagcgagtct tcttcttcca ttggccttat gtaggcctcc agcagaaggt
     6841 gtcactgaga tacatagatg tatcaccatg cctggatttg gagctttctt tgtcccacgt
     6901 tggccttgaa ctcagagatc tggttacctc gatctcctgt ttttaaggtc atgtactacc
     6961 ttgcctggtc ctaagctttt catggccact atacctcaag atctggatca aaagcatgtg
     7021 tcatttaaag tgagatatgg gtcagaagcc catgttctcc agcctcaaga tctggatgac
     7081 aggtttgacc tccatttctg gattgtagtt cattccagtt gtagtcaagt cgacaaccag
     7141 gaatagccat cacaacagat acgatagtac ctaccaaaga aagctaagag agaagaatga
     7201 gccttaatcg tagggccctc tcctgcaaca gaagccgaga agagaaatct tgatatttgt
     7261 cctcagaaaa acattatttg tcaaatattt gttgttttag aagtttgtga gtttcctgaa
     7321 agcattttca tatgtttcaa ggattacacc caagcagaaa aactcaaaat gtgtgcaaat
     7381 agcatgtatt ttctaatgat ttattttact tttatgtact ttgccatttt gcttgattgt
     7441 gtgtctgtct gtgtgaaggt gttggatctc ctggaactat agagctagtt gtaagctgcc
     7501 ctgtgggtac tgggattgaa cttgggccct ctggaagccc agccagtgct cttaaccact
     7561 gaattgtgac aaggacctta gttggcccca ggaccttagc acaactgagt taatgatgga
     7621 gtagtatcac atgagtaata caattcagca tgtaaacaat ctcacctccc aaaacaaagg
     7681 cctaatctat caaaatccgt aattcttgga aagtctgtca gtgtactaac cttgctgttt
     7741 ggcttttgta ggtctgcttc atgctgtttt gttttctgat atttgtcaac ccagaacata
     7801 gtttttgtgc ttaaaagctc cccctgagaa agaatcaggg ctacactggc atgccaaacc
     7861 ccaagtgtgg tctctcatgg gttattaaag attttctatt gacttaaa
//
