LOCUS       XM_039079064            2701 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 44
            (Usp44), transcript variant X9, mRNA.
ACCESSION   XM_039079064
VERSION     XM_039079064.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2701
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2701
                     /gene="Usp44"
                     /note="ubiquitin specific peptidase 44; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:314746"
                     /db_xref="RGD:1308216"
     CDS             227..2371
                     /gene="Usp44"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 44 isoform
                     X2"
                     /protein_id="XP_038934992.1"
                     /db_xref="GeneID:314746"
                     /db_xref="RGD:1308216"
                     /translation="MDRCKHIEQLQLAQGHSILNPQKWFCMVCNTTESIWACLSCSHV
                     ACGQYIQEHALKHFEESSHPVAFEVNDMYVFCYLCNDYVLNDNTAGDLKSLRSTLSAI
                     KGKSYPCVVQSDSVLQPVNAQADSYSLHDSTQSLPGSEDPMCTALWHRRRALMGKTFR
                     TWFEQSPIGRKRQEQTQEKTVAKREVKRRQQELEQQMKAELECTPPRKSLRLQGLSEA
                     ATVEILPVQAPPPPPASPAKEKALALPPSEDGKLKRVSDSLIKRRPAVTPGVTGLRNL
                     GNTCYMNSVLQVLSHLLIFRQCFLKLDLNQWLAVAASDKARSYKHSAVTDAATAAAHQ
                     LNEGQEKEKGFACSRHPGLSSGLSGGASKGRNMELIQPREPSSPYSSLCHELHTLFQV
                     MWSGEWALVSPFAMLHSVWKLIPAFRGYAQQDAQEFLCELLDKIQRELETTGTKLPAL
                     IPTSQRRLIEQVLNVVNNIFHGQLLSQVTCLACNNKSNTIEPFWDLSLEFPERYQCSG
                     KDAASQPCLVTDMLGKFTETEALEGKIYVCDHCNSKRRKFSSKPVVLTEAQKQLMICH
                     LPQVLRLHLKRFRWSGRNNREKIGVHVVFEETLNMEPYCCSETLNALRPECFIYNLSA
                     VVIHHGKGFGSGHYTAYCYNSEGGFWVHCNDSKLSMCTMEEVLRAQAYILFYTQRVTE
                     NGHSRLLPPELLSNSQQHPSEETDTSSNEVLS"
ORIGIN      
        1 ccattaatcc ctgatttgaa aaaagaagga actctgagat gagtgatcag cttgaagaga
       61 attataactt ataaattctt tgctgacttt atattgccca tagacaattt ggggagtgat
      121 gcagaccgag aatcctccaa gacccagttt tcagatgctc cccgtgttgt gaagagaggc
      181 ccgactggat tatgtgtttt tcagacagac tagatccctg ctaacaatgg ataggtgcaa
      241 gcacattgag cagctgcagc ttgctcaagg acattccatc ctcaaccctc agaaatggtt
      301 ctgcatggtc tgcaatacaa cggagtccat ttgggcttgc ctcagctgtt cccacgtcgc
      361 ctgtgggcag tatatccaag agcacgcact gaagcacttt gaagaaagca gccatcccgt
      421 ggcctttgag gtgaatgaca tgtatgtttt ttgttatctt tgtaacgatt atgtcctaaa
      481 cgataacaca gccggagatc tgaagtcact acgaagtaca ctaagtgcaa tcaaaggtaa
      541 aagttaccct tgtgtggttc agagtgactc ggtcttacag cctgtgaatg cgcaggccga
      601 ttcttactcc ctacacgaca gcacccagtc tctgcctgga agtgaagatc cgatgtgcac
      661 tgccctctgg cacaggagac gtgcgctcat gggaaaaacc tttcgaactt ggtttgaaca
      721 gtcaccgatt ggaaggaaaa ggcaagagca aactcaggag aaaacggtag ccaagagaga
      781 ggtgaagaga aggcagcagg agttagaaca gcagatgaaa gctgagctgg aatgcactcc
      841 tccgcgaaag agtttacgct tacaaggcct ctccgaggcg gccacggtcg aaatccttcc
      901 ggtgcaggca ccgccgccac ctccagcgtc cccagcgaag gagaaagcct tagcgctacc
      961 tccctcggaa gacgggaaac ttaaaagagt aagtgactcc ttaatcaaac gaaggcccgc
     1021 ggtaactcct ggtgtaaccg gactgagaaa tttaggaaat acttgctata tgaattctgt
     1081 tcttcaagtg ttgagtcatt tactcatttt tcgacaatgt tttttaaagc ttgacctgaa
     1141 ccaatggctg gctgtggctg ccagcgataa agcccgatcc tataagcact cagccgtcac
     1201 ggatgccgcg acagcggcgg cacatcagct gaacgaaggg caagagaagg agaaaggctt
     1261 cgcgtgctcc agacacccgg gtttatcttc aggcctaagc ggaggagcct ccaaaggtcg
     1321 gaacatggag ctcattcagc caagggagcc cagttccccg tacagttctc tctgccatga
     1381 attgcacacc ctgttccaag tcatgtggtc cggagagtgg gccctggtct cgccgtttgc
     1441 catgcttcac tcagtgtgga agctgatccc tgctttccgt ggttacgccc agcaagatgc
     1501 gcaggaattt ctttgtgaac ttctggataa gatacagcga gaactagaga caaccggaac
     1561 caaattacca gctctcatcc ccacctccca aaggaggctc attgagcaag ttctgaacgt
     1621 cgtaaataac atttttcacg gacaactact tagtcaggtt acctgccttg cttgcaacaa
     1681 caaatccaat actatagagc cgttctggga cttgtcactg gaattcccag agagatacca
     1741 atgcagtggg aaagacgctg cctcgcagcc atgtctggtc actgatatgt tgggcaagtt
     1801 tacagaaaca gaagctttag aagggaaaat ctacgtgtgt gaccattgta actcaaagcg
     1861 tagaaagttt tcgtcaaaac cagttgtact cacagaagcc cagaaacagc tcatgatatg
     1921 ccacctccct caggttctca gactgcacct caagcgattc agatggtcag gacgtaataa
     1981 ccgagagaag attggtgttc atgttgtctt tgaggaaacc ttaaacatgg agccctattg
     2041 ctgcagtgag accctgaacg ctctcagacc agagtgcttt atctataatt tatctgctgt
     2101 cgtaatccac catggaaaag gatttggctc aggacactac actgcctact gctacaattc
     2161 tgaaggaggg ttctgggtac actgcaacga ctccaagcta agcatgtgca ctatggaaga
     2221 agtgctcagg gcccaggctt atatcttatt ctatacccag cgagtgactg agaacggaca
     2281 ttcgagactc ttgcctcctg agctcctgtc caacagccag cagcacccca gtgaagaaac
     2341 ggacacctct tctaatgaag tcctcagctg atccagaccg tgggctctcg ttatttgtat
     2401 atatactttt taaatgggct gacctacgat gctgggcttc attgttttta ttctgtaatt
     2461 atgatcagtg cctgctgttt acacattgtg tatttaacta caaagttttt ctttttttac
     2521 agagacaaac tataaatata tgtatatcaa ctataggcca actaaaactt ttttcaaata
     2581 tttgagtttt atacttttag tgtttacctc aatattatta cctcttatat tttgatgtct
     2641 taattgcctc aaatcatgaa tttgtgcaat ctactaaaga aattcaggtg gcatcctttt
     2701 a
//
