LOCUS       XM_039079058            2786 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 44
            (Usp44), transcript variant X4, mRNA.
ACCESSION   XM_039079058
VERSION     XM_039079058.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2786
                     /gene="Usp44"
                     /note="ubiquitin specific peptidase 44; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:314746"
                     /db_xref="RGD:1308216"
     CDS             261..2456
                     /gene="Usp44"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 44 isoform
                     X1"
                     /protein_id="XP_038934986.1"
                     /db_xref="GeneID:314746"
                     /db_xref="RGD:1308216"
                     /translation="MQTENPPRPRQTRSLLTMDRCKHIEQLQLAQGHSILNPQKWFCM
                     VCNTTESIWACLSCSHVACGQYIQEHALKHFEESSHPVAFEVNDMYVFCYLCNDYVLN
                     DNTAGDLKSLRSTLSAIKGKSYPCVVQSDSVLQPVNAQADSYSLHDSTQSLPGSEDPM
                     CTALWHRRRALMGKTFRTWFEQSPIGRKRQEQTQEKTVAKREVKRRQQELEQQMKAEL
                     ECTPPRKSLRLQGLSEAATVEILPVQAPPPPPASPAKEKALALPPSEDGKLKRVSDSL
                     IKRRPAVTPGVTGLRNLGNTCYMNSVLQVLSHLLIFRQCFLKLDLNQWLAVAASDKAR
                     SYKHSAVTDAATAAAHQLNEGQEKEKGFACSRHPGLSSGLSGGASKGRNMELIQPREP
                     SSPYSSLCHELHTLFQVMWSGEWALVSPFAMLHSVWKLIPAFRGYAQQDAQEFLCELL
                     DKIQRELETTGTKLPALIPTSQRRLIEQVLNVVNNIFHGQLLSQVTCLACNNKSNTIE
                     PFWDLSLEFPERYQCSGKDAASQPCLVTDMLGKFTETEALEGKIYVCDHCNSKRRKFS
                     SKPVVLTEAQKQLMICHLPQVLRLHLKRFRWSGRNNREKIGVHVVFEETLNMEPYCCS
                     ETLNALRPECFIYNLSAVVIHHGKGFGSGHYTAYCYNSEGGFWVHCNDSKLSMCTMEE
                     VLRAQAYILFYTQRVTENGHSRLLPPELLSNSQQHPSEETDTSSNEVLS"
ORIGIN      
        1 acctgacgga gttttcccgc ccgcaggcag ccggggggtc ctgcgagaga agagggggct
       61 gtggacagac ggagggagcg agccaagggg cgcgcggtgg agaggcgccg gcgccggcga
      121 atttagaatt ggcgcctctg ggaagtctcg gtgcgtcttg cggtcctgca gcccggagtc
      181 cgctggccac ctcccgggta ccggagatgc tacagaattc tttgctgact ttatattgcc
      241 catagacaat ttggggagtg atgcagaccg agaatcctcc aagacccaga cagactagat
      301 ccctgctaac aatggatagg tgcaagcaca ttgagcagct gcagcttgct caaggacatt
      361 ccatcctcaa ccctcagaaa tggttctgca tggtctgcaa tacaacggag tccatttggg
      421 cttgcctcag ctgttcccac gtcgcctgtg ggcagtatat ccaagagcac gcactgaagc
      481 actttgaaga aagcagccat cccgtggcct ttgaggtgaa tgacatgtat gttttttgtt
      541 atctttgtaa cgattatgtc ctaaacgata acacagccgg agatctgaag tcactacgaa
      601 gtacactaag tgcaatcaaa ggtaaaagtt acccttgtgt ggttcagagt gactcggtct
      661 tacagcctgt gaatgcgcag gccgattctt actccctaca cgacagcacc cagtctctgc
      721 ctggaagtga agatccgatg tgcactgccc tctggcacag gagacgtgcg ctcatgggaa
      781 aaacctttcg aacttggttt gaacagtcac cgattggaag gaaaaggcaa gagcaaactc
      841 aggagaaaac ggtagccaag agagaggtga agagaaggca gcaggagtta gaacagcaga
      901 tgaaagctga gctggaatgc actcctccgc gaaagagttt acgcttacaa ggcctctccg
      961 aggcggccac ggtcgaaatc cttccggtgc aggcaccgcc gccacctcca gcgtccccag
     1021 cgaaggagaa agccttagcg ctacctccct cggaagacgg gaaacttaaa agagtaagtg
     1081 actccttaat caaacgaagg cccgcggtaa ctcctggtgt aaccggactg agaaatttag
     1141 gaaatacttg ctatatgaat tctgttcttc aagtgttgag tcatttactc atttttcgac
     1201 aatgtttttt aaagcttgac ctgaaccaat ggctggctgt ggctgccagc gataaagccc
     1261 gatcctataa gcactcagcc gtcacggatg ccgcgacagc ggcggcacat cagctgaacg
     1321 aagggcaaga gaaggagaaa ggcttcgcgt gctccagaca cccgggttta tcttcaggcc
     1381 taagcggagg agcctccaaa ggtcggaaca tggagctcat tcagccaagg gagcccagtt
     1441 ccccgtacag ttctctctgc catgaattgc acaccctgtt ccaagtcatg tggtccggag
     1501 agtgggccct ggtctcgccg tttgccatgc ttcactcagt gtggaagctg atccctgctt
     1561 tccgtggtta cgcccagcaa gatgcgcagg aatttctttg tgaacttctg gataagatac
     1621 agcgagaact agagacaacc ggaaccaaat taccagctct catccccacc tcccaaagga
     1681 ggctcattga gcaagttctg aacgtcgtaa ataacatttt tcacggacaa ctacttagtc
     1741 aggttacctg ccttgcttgc aacaacaaat ccaatactat agagccgttc tgggacttgt
     1801 cactggaatt cccagagaga taccaatgca gtgggaaaga cgctgcctcg cagccatgtc
     1861 tggtcactga tatgttgggc aagtttacag aaacagaagc tttagaaggg aaaatctacg
     1921 tgtgtgacca ttgtaactca aagcgtagaa agttttcgtc aaaaccagtt gtactcacag
     1981 aagcccagaa acagctcatg atatgccacc tccctcaggt tctcagactg cacctcaagc
     2041 gattcagatg gtcaggacgt aataaccgag agaagattgg tgttcatgtt gtctttgagg
     2101 aaaccttaaa catggagccc tattgctgca gtgagaccct gaacgctctc agaccagagt
     2161 gctttatcta taatttatct gctgtcgtaa tccaccatgg aaaaggattt ggctcaggac
     2221 actacactgc ctactgctac aattctgaag gagggttctg ggtacactgc aacgactcca
     2281 agctaagcat gtgcactatg gaagaagtgc tcagggccca ggcttatatc ttattctata
     2341 cccagcgagt gactgagaac ggacattcga gactcttgcc tcctgagctc ctgtccaaca
     2401 gccagcagca ccccagtgaa gaaacggaca cctcttctaa tgaagtcctc agctgatcca
     2461 gaccgtgggc tctcgttatt tgtatatata ctttttaaat gggctgacct acgatgctgg
     2521 gcttcattgt ttttattctg taattatgat cagtgcctgc tgtttacaca ttgtgtattt
     2581 aactacaaag tttttctttt tttacagaga caaactataa atatatgtat atcaactata
     2641 ggccaactaa aacttttttc aaatatttga gttttatact tttagtgttt acctcaatat
     2701 tattacctct tatattttga tgtcttaatt gcctcaaatc atgaatttgt gcaatctact
     2761 aaagaaattc aggtggcatc ctttta
//
