LOCUS       XM_039079057            4182 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 44
            (Usp44), transcript variant X3, mRNA.
ACCESSION   XM_039079057
VERSION     XM_039079057.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4182
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4182
                     /gene="Usp44"
                     /note="ubiquitin specific peptidase 44; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:314746"
                     /db_xref="RGD:1308216"
     CDS             201..2396
                     /gene="Usp44"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 44 isoform
                     X1"
                     /protein_id="XP_038934985.1"
                     /db_xref="GeneID:314746"
                     /db_xref="RGD:1308216"
                     /translation="MQTENPPRPRQTRSLLTMDRCKHIEQLQLAQGHSILNPQKWFCM
                     VCNTTESIWACLSCSHVACGQYIQEHALKHFEESSHPVAFEVNDMYVFCYLCNDYVLN
                     DNTAGDLKSLRSTLSAIKGKSYPCVVQSDSVLQPVNAQADSYSLHDSTQSLPGSEDPM
                     CTALWHRRRALMGKTFRTWFEQSPIGRKRQEQTQEKTVAKREVKRRQQELEQQMKAEL
                     ECTPPRKSLRLQGLSEAATVEILPVQAPPPPPASPAKEKALALPPSEDGKLKRVSDSL
                     IKRRPAVTPGVTGLRNLGNTCYMNSVLQVLSHLLIFRQCFLKLDLNQWLAVAASDKAR
                     SYKHSAVTDAATAAAHQLNEGQEKEKGFACSRHPGLSSGLSGGASKGRNMELIQPREP
                     SSPYSSLCHELHTLFQVMWSGEWALVSPFAMLHSVWKLIPAFRGYAQQDAQEFLCELL
                     DKIQRELETTGTKLPALIPTSQRRLIEQVLNVVNNIFHGQLLSQVTCLACNNKSNTIE
                     PFWDLSLEFPERYQCSGKDAASQPCLVTDMLGKFTETEALEGKIYVCDHCNSKRRKFS
                     SKPVVLTEAQKQLMICHLPQVLRLHLKRFRWSGRNNREKIGVHVVFEETLNMEPYCCS
                     ETLNALRPECFIYNLSAVVIHHGKGFGSGHYTAYCYNSEGGFWVHCNDSKLSMCTMEE
                     VLRAQAYILFYTQRVTENGHSRLLPPELLSNSQQHPSEETDTSSNEVLS"
ORIGIN      
        1 agggcctcca acagaccaaa atggaaagct ttggatgaag agagcctgcc gtggtgagaa
       61 gtcagaggat tcagaaaggc tggtatgagg acagtggctt cagcatgatc cactcagctt
      121 aattttaaac cgaagccgtc acctggtaaa ttctgaattc tttgctgact ttatattgcc
      181 catagacaat ttggggagtg atgcagaccg agaatcctcc aagacccaga cagactagat
      241 ccctgctaac aatggatagg tgcaagcaca ttgagcagct gcagcttgct caaggacatt
      301 ccatcctcaa ccctcagaaa tggttctgca tggtctgcaa tacaacggag tccatttggg
      361 cttgcctcag ctgttcccac gtcgcctgtg ggcagtatat ccaagagcac gcactgaagc
      421 actttgaaga aagcagccat cccgtggcct ttgaggtgaa tgacatgtat gttttttgtt
      481 atctttgtaa cgattatgtc ctaaacgata acacagccgg agatctgaag tcactacgaa
      541 gtacactaag tgcaatcaaa ggtaaaagtt acccttgtgt ggttcagagt gactcggtct
      601 tacagcctgt gaatgcgcag gccgattctt actccctaca cgacagcacc cagtctctgc
      661 ctggaagtga agatccgatg tgcactgccc tctggcacag gagacgtgcg ctcatgggaa
      721 aaacctttcg aacttggttt gaacagtcac cgattggaag gaaaaggcaa gagcaaactc
      781 aggagaaaac ggtagccaag agagaggtga agagaaggca gcaggagtta gaacagcaga
      841 tgaaagctga gctggaatgc actcctccgc gaaagagttt acgcttacaa ggcctctccg
      901 aggcggccac ggtcgaaatc cttccggtgc aggcaccgcc gccacctcca gcgtccccag
      961 cgaaggagaa agccttagcg ctacctccct cggaagacgg gaaacttaaa agagtaagtg
     1021 actccttaat caaacgaagg cccgcggtaa ctcctggtgt aaccggactg agaaatttag
     1081 gaaatacttg ctatatgaat tctgttcttc aagtgttgag tcatttactc atttttcgac
     1141 aatgtttttt aaagcttgac ctgaaccaat ggctggctgt ggctgccagc gataaagccc
     1201 gatcctataa gcactcagcc gtcacggatg ccgcgacagc ggcggcacat cagctgaacg
     1261 aagggcaaga gaaggagaaa ggcttcgcgt gctccagaca cccgggttta tcttcaggcc
     1321 taagcggagg agcctccaaa ggtcggaaca tggagctcat tcagccaagg gagcccagtt
     1381 ccccgtacag ttctctctgc catgaattgc acaccctgtt ccaagtcatg tggtccggag
     1441 agtgggccct ggtctcgccg tttgccatgc ttcactcagt gtggaagctg atccctgctt
     1501 tccgtggtta cgcccagcaa gatgcgcagg aatttctttg tgaacttctg gataagatac
     1561 agcgagaact agagacaacc ggaaccaaat taccagctct catccccacc tcccaaagga
     1621 ggctcattga gcaagttctg aacgtcgtaa ataacatttt tcacggacaa ctacttagtc
     1681 aggttacctg ccttgcttgc aacaacaaat ccaatactat agagccgttc tgggacttgt
     1741 cactggaatt cccagagaga taccaatgca gtgggaaaga cgctgcctcg cagccatgtc
     1801 tggtcactga tatgttgggc aagtttacag aaacagaagc tttagaaggg aaaatctacg
     1861 tgtgtgacca ttgtaactca aagcgtagaa agttttcgtc aaaaccagtt gtactcacag
     1921 aagcccagaa acagctcatg atatgccacc tccctcaggt tctcagactg cacctcaagc
     1981 gattcagatg gtcaggacgt aataaccgag agaagattgg tgttcatgtt gtctttgagg
     2041 aaaccttaaa catggagccc tattgctgca gtgagaccct gaacgctctc agaccagagt
     2101 gctttatcta taatttatct gctgtcgtaa tccaccatgg aaaaggattt ggctcaggac
     2161 actacactgc ctactgctac aattctgaag gagggttctg ggtacactgc aacgactcca
     2221 agctaagcat gtgcactatg gaagaagtgc tcagggccca ggcttatatc ttattctata
     2281 cccagcgagt gactgagaac ggacattcga gactcttgcc tcctgagctc ctgtccaaca
     2341 gccagcagca ccccagtgaa gaaacggaca cctcttctaa tgaagtcctc agctgatcca
     2401 gaccctgttt tctatacaga ttctaactac atgggaagga gatgctcttc acaaattgtc
     2461 ttactaagaa aagaatgcca ttggtctaac gactcccgtt ctgcgccttg gagaatagat
     2521 tggaagtgaa atactacagt agttctggtt gttcccgagg ctgcatcctc ccacagggat
     2581 cagaacagat ctaatgcaga tcctgacctt tcactacaaa atgtattgct tccataactg
     2641 tcctttattg agcacaaatt taaactgaaa atggcagatt tacaatactt caatgaactt
     2701 tgaaactatg ggcaatgaaa aaatagttcc aataaagcag tcacaaaatt ttgaacttag
     2761 caaaccagta tattatgata tacaaatgta gtttatcttg agagtgaatt tttatgttta
     2821 attattttag atcacttaag tccttgagtt tttttttttt tagttgaaag gaatatagta
     2881 ggacaaaatg catagagaca gatgtataag gcagagaaga cactgggtca agcatggtac
     2941 ctggggtatt acatctaaga tctcattttt ctttaagtaa cttgagcctg actctagcaa
     3001 agattatgtg accactggga acttctcagg gccctggccc ctctttaaaa actctgcaag
     3061 tgacctaaac tgagagattt cttctgcttt gtactaaaga aagcttccca ggttttatgg
     3121 gaacccggct gctgcagtgc aaagccaccc ccgccaccac ccccctaacc tgctcagaaa
     3181 gggggctcca ccagcctact gatcccaaat tccctgtcag cccctgggag accttttgtc
     3241 tcctcttgct aaataaagtg acagcttact tctaagccag gcagagttag ctgtctttag
     3301 cacagacttc tgaaaggagt ggcacctggg gcagcttgta acaaaactgc aacaaaaaag
     3361 gcgtcagcgt gctggagcat acggagaata ctgggtctga aaatgcctta acagtgtgct
     3421 aacaggatgc acactgttac atcaaccgtt aaatgtacct cattaaagat ttatgtgaaa
     3481 ggtaccgagt cgaacctttg atttcacgaa tggttttttg aatcgataca ttgtagcacc
     3541 ttatttttac tgctgtttaa aagagagaaa agcgtgaaac cagcacacag cagactgttg
     3601 tacttacatg atttttgttg tgaatctaaa actgcattga agaaaacaaa acccaaatga
     3661 tgaaaagaaa cctgttttct tattaaatac ctcagttgta ccatggacat ctatattctt
     3721 aagttgttct aaccaaaacc aacagtgtgg attgtaaaat aatttactaa aggctctatt
     3781 gttaaacatc acaggaagac ttggttccag gaagagatac atcacgaaat gtaacaatga
     3841 ttttagggga tacatagcta gtaagcaaac aatacattcc cctgtgtgtt ggttttggct
     3901 ttcctttata aatgctccca acagtgctga gataagtttg gaccttacaa agaggagact
     3961 gctaaaaagg tcttagaaaa ctctaaagct ctttggttag gggtcagttt ttaacatcct
     4021 gggcttagat atcaaggaac atgaatccag agccccagga gccagctgga gagcctcatg
     4081 aatgtgtgtt gaaaaccgat gtcatactca aaggcagcag tgtgactacc agcgccataa
     4141 agaccactca taccgcccaa agtaaccttt acttaaaact at
//
