LOCUS       NM_001105909            5749 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus ubiquitin specific peptidase 42 (Usp42), mRNA.
ACCESSION   NM_001105909 XM_001072044 XM_237865
VERSION     NM_001105909.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5749)
  AUTHORS   Kim,Y.K., Kim,Y.S., Yoo,K.J., Lee,H.J., Lee,D.R., Yeo,C.Y. and
            Baek,K.H.
  TITLE     The expression of Usp42 during embryogenesis and spermatogenesis in
            mouse
  JOURNAL   Gene Expr Patterns 7 (1-2), 143-148 (2007)
   PUBMED   16904385
REFERENCE   2  (bases 1 to 5749)
  AUTHORS   Quesada,V., Diaz-Perales,A., Gutierrez-Fernandez,A., Garabaya,C.,
            Cal,S. and Lopez-Otin,C.
  TITLE     Cloning and enzymatic analysis of 22 novel human ubiquitin-specific
            proteases
  JOURNAL   Biochem Biophys Res Commun 314 (1), 54-62 (2004)
   PUBMED   14715245
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474012.1.
            
            On or before Oct 3, 2007 this sequence version replaced
            XM_001072044.1, XM_237865.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132263,
                              SAMD00132272 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5749
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12p11"
     gene            1..5749
                     /gene="Usp42"
                     /note="ubiquitin specific peptidase 42"
                     /db_xref="GeneID:288482"
                     /db_xref="RGD:1305231"
     CDS             1..3978
                     /gene="Usp42"
                     /EC_number="3.4.19.12"
                     /note="deubiquitinating enzyme 42; ubiquitin thiolesterase
                     42; ubiquitin-specific-processing protease 42; ubiquitin
                     specific protease 42; ubiquitin thioesterase 42"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 42"
                     /protein_id="NP_001099379.1"
                     /db_xref="GeneID:288482"
                     /db_xref="RGD:1305231"
                     /translation="MTIVDKTEPSDPSTCQNQPGSSEAVSPEDMDTGSASWGAVSSIS
                     DVSNHTLSLGPVPGAVVYNNSSVPEKSKPSPPKDQVLGDGIAPPQKVLFPSEKICLKW
                     QQSHRVGAGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQT
                     HITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNK
                     LDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVTKALEQF
                     VKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISLKRFANFTGGKIAKDVKYP
                     EYLDIRPYMSQPNGEPIIYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVST
                     SDIRSVLNQQAYVLFYIRSHDVKNGGETTHPAHSPGQSSPRPGISQRVVNSKQAAPGF
                     IGPQLPPHVMKNTPHLNGTTPVKDTPSSSVSSPNGNTSVNRASPATASTSVQNWSVNR
                     PSVIPEHPKKQKITISIHNKLPVRQGQAQLNNNLHGPCLEAPSKAAPSSTITNPSAIQ
                     STSNAPTTSVSPSESCPKPMVNGKAKVGSSVLVPYGAESSEESDEESKGLAKENGVDM
                     MTSTQSSRPETADEDGEASPHELQESVMLNGANSADSDSRESSLAFDSASCQVQPDLH
                     TENLFNKLNGLPGKVTPAPLQSVPEDKILETFKLTNQAKGPAVEESWTTTGGSSPRAS
                     VSQPEPITDETSPLEIPEAVTNGSMKTPSTTSPLEPTISCTKEDSSVVVVSAEPMEVL
                     PSVPALCNSTGTTLGDAPVPESCDPGDLTANPSQPSQAVKGDPAENSENSTLAEVVER
                     LSPAPSVLTGDGCEQKLFLYLSTEGSEEAEDSSRSSAVSADTVPPQPDRTTSSCAGAA
                     EQAAGDRGDGGSVGPKAQEPSPAKEKMNSLRKVDRGHYRSRRDRSSSGEHVRDSRARP
                     EDHHHKKRRCYSRERPKQERHPANTYCNGGQHLGHGDRASPERRSLSRYSHHHSRVRS
                     GLEQDWSRYHHSENEPAWARERFYPDKMRWDKCRYYHDRYTTTLYTAREAAREWRPLH
                     GREHERLVQSGRPHKDSYWGRKGWDLQSRGKERPHFHSPREAPGLAVPLERHLQEKAA
                     LSVQDSSHSLPERFHEHESVKLRKRRYETLDNNDDHPEKKVHKSLEKDALEEPRAKKH
                     KKSKKKKKSKDKHRARDSRHQQESDFSGAYSDADLHRHRKKKKKKKRHSRKSEDFIKD
                     VEMHLPKLSSYEAVGHFRRTEGTFLLADGLPVEDSGPFREKTKHLRMESRPDRCHLSE
                     YGQGN"
     exon            1..238
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            239..439
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            440..550
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            551..653
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            654..721
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            722..792
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            793..875
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            876..987
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1128
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            1129..1229
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            1230..1383
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            1384..2088
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            2089..2183
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            2184..3668
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            3669..3970
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            3971..4009
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
     exon            4010..5749
                     /gene="Usp42"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaccatag ttgacaaaac tgaaccttca gacccatcaa cctgtcagaa ccagcctggc
       61 agttctgagg cggtctcacc tgaagacatg gacacaggct ctgccagctg gggtgccgtg
      121 tcttccataa gtgatgtctc aaatcataca ctttcattgg ggccggtgcc tggtgctgta
      181 gtttacaata actcgtctgt acctgagaaa tcaaaaccat caccaccaaa ggatcaagtc
      241 ctaggtgatg gcattgctcc tcctcaaaag gtcctatttc catctgaaaa gatttgtctt
      301 aagtggcaac aaagtcatcg agttggcgct gggctgcaga atttgggcaa tacctgtttt
      361 gccaatgctg cgttgcaatg tctgacttac acaccacccc tcgccaacta catgctatcc
      421 catgaacact ccaagacatg ccatgcagaa ggattctgta tgatgtgcac aatgcagacg
      481 cacattaccc aggcacttag caaccctggg gatgttatca agcccatgtt cgtcatcaat
      541 gaaatgcggc gtatagctag acatttccgt tttggtaacc aagaagatgc ccatgaattt
      601 cttcagtaca cggtcgatgc catgcagaaa gcatgtttaa atggcagcaa taaattagac
      661 agacataccc aggccaccac cctggtctgc cagatatttg gaggctacct aagatcccga
      721 gtcaagtgtt taaattgcaa gggtgtttca gacacctttg atccatacct ggacataaca
      781 ctggagatta aggctgcaca gagcgttacc aaggcgctgg aacagttcgt gaagccagaa
      841 caactggatg gagaaaactc ctacaaatgt agcaagtgca aaaagatggt tccagcttca
      901 aagagattca ccatccatag gtcctctaat gttcttacca tttcactgaa acggtttgcc
      961 aactttaccg gtggaaaaat tgctaaggac gtgaaatatc ccgagtacct tgatatccgg
     1021 ccctatatgt ctcagcccaa cggagagccc atcatttatg ttttgtatgc tgtgctggtg
     1081 cacaccggtt ttaactgtca tgctggccac tacttttgct acatcaaggc tagcaatggc
     1141 ctctggtatc agatgaatga ctctatcgtg tccaccagtg atattagatc ggtgcttaac
     1201 cagcaggctt acgtgctctt ttatatcagg tcccatgatg tgaaaaatgg aggggagacc
     1261 actcatcctg cccatagccc tggccagtcc tccccccggc cagggatcag tcagcgtgta
     1321 gtcaacagca agcaggcggc gccaggattc atcgggccgc agctgcctcc ccatgtgatg
     1381 aagaacacac cacacttgaa tggcaccacg ccggtgaaag acacaccaag cagttctgtt
     1441 tcaagcccta acggaaacac cagcgtcaat agggccagtc ctgctacggc ttcgacgtct
     1501 gtgcagaact ggtctgttaa caggccctca gttattccgg aacaccctaa gaaacaaaaa
     1561 attactatca gtattcacaa caagttgcct gttcgtcaag gtcaggcaca gctgaataac
     1621 aacctccatg gcccttgtct ggaggcccct agcaaggcgg ccccctcctc caccatcact
     1681 aacccttctg caatacagtc tacctcgaat gcacccacga catcagtttc cccaagtgag
     1741 tcctgtccca agcccatggt gaatggcaag gctaaagtgg gctccagtgt gctcgtcccc
     1801 tatggggctg agtcctcaga ggagtctgat gaggagtcca agggcctggc caaggagaac
     1861 ggtgtggaca tgatgaccag cactcagtcc agtagaccag aaaccgcaga tgaggacggt
     1921 gaggcttccc ctcatgagct tcaagagtcc gtcatgctaa atggtgctaa tagcgcagac
     1981 agtgactcga gagagagcag cctggcattt gacagtgcca gctgccaggt ccagcccgat
     2041 ctacacacag aaaacctctt taacaaactc aatggtcttc ctggaaaggt gacgcccgct
     2101 ccattgcagt ctgttcctga agacaaaatc cttgagactt tcaagcttac caaccaggca
     2161 aaaggtccag cggttgaaga gagttggact acaacagggg gaagctctcc aagggcctct
     2221 gtttcacagc cggagcccat caccgatgag accagtcccc ttgagatacc ggaggcagtc
     2281 accaacggga gcatgaagac cccttccacc acgtcacctc tggagcccac catcagctgt
     2341 accaaagaag actcttccgt cgtcgtcgtc tcagcagaac ctatggaggt tttgccttcc
     2401 gtccctgctc tctgtaacag caccggtact accttggggg atgccccagt gcccgaatcg
     2461 tgtgaccctg gagacttgac tgccaacccg agccaaccat cgcaagcggt gaagggtgat
     2521 ccagctgaga actctgagaa ctccaccttg gctgaagtgg tggagaggct gagccctgct
     2581 ccctctgtgc tcacagggga cgggtgtgag cagaaactct tcctttacct cagtacagag
     2641 gggtccgagg aggcagaaga ctcctccagg agctcggcag tctctgctga cacggtgccc
     2701 cctcagcctg acaggaccac cagctcctgt gcaggggctg ccgagcaggc tgccggggat
     2761 agaggcgatg gaggcagtgt gggacccaaa gctcaggagc cctccccggc caaggaaaag
     2821 atgaacagcc ttcggaaagt ggatcgagga cactatcgga gccggagaga ccggtcctcc
     2881 agtggggagc acgtgaggga cagcagggcc cgaccagagg accatcacca taagaagcgg
     2941 cgctgctaca gccgagagcg gcccaagcag gagcgccacc ctgctaacac atactgcaat
     3001 gggggccagc acctgggcca cggcgacaga gccagccccg agcgccgctc cctgagcagg
     3061 tacagccacc atcactcacg ggttaggagt ggcctggagc aggactggag ccggtaccac
     3121 cactcggaaa atgagcctgc ctgggccagg gagaggttct acccggacaa gatgcgctgg
     3181 gacaagtgta ggtattacca cgacaggtac actacgaccc tgtacacggc ccgggaggca
     3241 gcccgcgagt ggcggcctct acatggtcgt gagcatgaac gccttgtcca gtctggacgg
     3301 ccacacaagg acagctactg gggccgcaag ggctgggacc tacaatcccg ggggaaggaa
     3361 cggccccact tccatagccc acgagaggcc cctggccttg ctgtacccct cgagaggcat
     3421 ctccaagaga aggctgcgct gagtgtgcag gacagcagcc acagtctccc tgagcgcttt
     3481 catgaacacg aaagtgtcaa gttgaggaaa aggaggtatg agactctaga caataatgac
     3541 gaccatccag aaaagaaagt ccacaaaagc ctggagaagg acgcgctaga agagccaagg
     3601 gcaaagaagc acaaaaaatc taaaaagaaa aagaagtcca aagataaaca ccgggctcgg
     3661 gatagcaggc accagcaaga atccgacttt tcaggagcat actctgatgc tgacctccat
     3721 agacaccgga agaaaaagaa gaaaaagaaa aggcattcaa ggaagtcgga ggactttata
     3781 aaagatgttg agatgcattt accgaagctc tcgagctatg aggccgttgg ccatttccgg
     3841 agaacagagg gcacctttct actggctgat ggtctgcctg tggaagacag cggccctttc
     3901 cgggagaaaa cgaagcattt aaggatggaa agccggcctg acagatgtca tctgtcagag
     3961 tatggccagg gtaactaaaa acccttggct ttataaccac aaaattacga gtcaacattt
     4021 tcaacagaag ccatccccaa cccagcttaa attataaaca tagaaaataa ctttgtccaa
     4081 actgcgtggt gcttctttag taaatactgt acagatttta ccatggacaa cttttttcct
     4141 tttttttttc tttttctttt tttttttttc agtttttacc ttttcttaat tgcccttatt
     4201 ccaaatggat actttgtaca ctgctgaacg ttgtaaatta ccgtgtacat aaaccacact
     4261 gacaatatcg ccctggaata gaccatctca atgctgctta accacagact caggtgacta
     4321 cttgtatctc atgtaatgtc cctccacgct agacacctgg tgcacggcca gctgggaacc
     4381 atggacttca caaggacaag cgacagtgcg tctatttaat ttaaagactt atttaaagac
     4441 ccaagctctc agcgagacct tcgagggctt cctctgcaat gtctgatact agaaactaat
     4501 ttgcttcaca ttttagttgt attcaagatt tgaagatgtg ttttatagac aagttctgtt
     4561 tttgaacttt gtggaactat tccaatcaac ttaccagtta tgatgagtat ttgcattatg
     4621 aatgtataat ccagacatta tttgtaaagc ctacagtatg ttttttttac ctaacacttt
     4681 ttatactgtg tctcgtctcg acaatatgat gttggagtct gagtcgtcag cttgatccct
     4741 tcaagtttct agttacagac aaaaatcata ctgtgatttt atttttaata tggatatgct
     4801 ataaaactgt gacacttata attcactggt cctgcatcag gagacgggag tggggagaag
     4861 actgtattta atacagtgtg tatctgaata atctgtatgg tttatataca gtttgtgttg
     4921 ttcagagatg tctaaagttg atctttgttt ttttaagatt aaaaaaagca cttgccccac
     4981 tgtatatata cggcatgtaa gatttatata gtatataaat ggcagcagat taaacaactc
     5041 agtctccgct tcactctgtg ctccacaagc gtgtgttttg aagaattgag tcttaggcgg
     5101 ttttgttttt agcggtatgt ttttatttac ggaaaacggt atttgcaata gttctgacag
     5161 ctgtaaggcc ctccatttca ctagctgttt gcaatagcca gaaattctga tgtggacatt
     5221 aataggatct ctcttcatgc aggttgtagg gagtatgtac attgtataac atggaagaaa
     5281 ttaatacata tttacactat ttacatagta actatttatt gtaaatagaa atgttttcta
     5341 agataaaaag gagaaatcac aacctatggt ttgtggtctg taacgaccta acttgtcagc
     5401 aaagcacacc ttagctctga agtcagtatg acacgaagcg cacacagtag gcggctgcat
     5461 ctccaaaggg ttcccagtta caccgctgtc ccaccacgtg ttctgaagcc cagcaggaca
     5521 ggaaacgctc tttggccaga gtagggctca atgcttcact gatgagtgca gacaaagggt
     5581 gaagggcatg agtgcccagc ctttacaagc tctgggcgtg gccagatgcc cttggggttt
     5641 aatactgtca caacgtaacc tgagttaagt gactccttgc ggatactcca agagccagta
     5701 acttaggatt cttagcacca acagccatca ggcaaaccaa cagccataa
//
