LOCUS       NM_001106597            2372 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus ubiquitin specific peptidase 39 (Usp39),
            transcript variant 1, mRNA.
ACCESSION   NM_001106597 XM_001063779 XM_216173
VERSION     NM_001106597.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Agafonov,D.E., Kastner,B., Dybkov,O., Hofele,R.V., Liu,W.T.,
            Urlaub,H., Luhrmann,R. and Stark,H.
  TITLE     Molecular architecture of the human U4/U6.U5 tri-snRNP
  JOURNAL   Science 351 (6280), 1416-1420 (2016)
   PUBMED   26912367
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Makarova,O.V., Makarov,E.M. and Luhrmann,R.
  TITLE     The 65 and 110 kDa SR-related proteins of the U4/U6.U5 tri-snRNP
            are essential for the assembly of mature spliceosomes
  JOURNAL   EMBO J 20 (10), 2553-2563 (2001)
   PUBMED   11350945
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Dec 22, 2021 this sequence version replaced NM_001106597.1.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-81                JAXUCZ010000004.1  105964471-105964551 c
            82-150              JAXUCZ010000004.1  105961314-105961382 c
            151-752             JAXUCZ010000004.1  105958161-105958762 c
            753-822             JAXUCZ010000004.1  105956379-105956448 c
            823-917             JAXUCZ010000004.1  105953329-105953423 c
            918-1054            JAXUCZ010000004.1  105951172-105951308 c
            1055-1207           JAXUCZ010000004.1  105950443-105950595 c
            1208-1433           JAXUCZ010000004.1  105949092-105949317 c
            1434-1511           JAXUCZ010000004.1  105945686-105945763 c
            1512-1579           JAXUCZ010000004.1  105941621-105941688 c
            1580-1768           JAXUCZ010000004.1  105940689-105940877 c
            1769-1911           JAXUCZ010000004.1  105937927-105938069 c
            1912-2047           JAXUCZ010000004.1  105934074-105934209 c
            2048-2134           JAXUCZ010000004.1  105933091-105933177 c
            2135-2372           JAXUCZ010000004.1  105932140-105932377 c
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q32"
     gene            1..2372
                     /gene="Usp39"
                     /note="ubiquitin specific peptidase 39"
                     /db_xref="GeneID:297336"
                     /db_xref="RGD:1308103"
     exon            1..81
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            82..150
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            151..752
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     CDS             488..2194
                     /gene="Usp39"
                     /EC_number="3.4.19.12"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ubiquitin specific protease 39; U4/U6.U5
                     tri-snRNP-associated protein 2; ubiquitin
                     carboxyl-terminal hydrolase 39"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 39 isoform
                     1"
                     /protein_id="NP_001100067.1"
                     /db_xref="GeneID:297336"
                     /db_xref="RGD:1308103"
                     /translation="MSSRSKRQSHGSTRGKRESESRGSSGRIKKERDREKEPEAASSR
                     GSPVRVKREAEPTPREVPAPVLPVVRVKREREADEDSEPEREVRAKNGRVDSEDRRSR
                     HCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSH
                     HVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTT
                     YLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRF
                     GELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALG
                     GTKKKKKTIVNDVFQGSMRIFTKKLPHPDLPAEEKEQLLHNEEYQETMVESTFMYLTL
                     DLPTAPLYKDEKEQLIIPQVPLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLI
                     FCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKP
                     SEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQHMPSLSASAGRTLTDGC
                     LI"
     exon            753..822
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            823..917
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            918..1054
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            1055..1207
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1433
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            1434..1511
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            1512..1579
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            1580..1768
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            1769..1911
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            1912..2047
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            2048..2134
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
     exon            2135..2372
                     /gene="Usp39"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gactgattaa ctggaggatg aagagcatgg agtgtggcag accctccttc accccgaagg
       61 ctctggatgg tatctaacca agtggcagaa atattaaaac acagcatgac agaccacact
      121 ggtggacagc gattcctggc cgggtcccag gtcatcagtc cctgatcatg gggacatctg
      181 tggattgtcg tttcgagaca caaactatcc tgaagatatc tcgggttgaa tgctagcttc
      241 gtttttccta cagtcaacgt agcctatgaa aggttctatt taagctgtga agagaagatg
      301 gataaaggac acaatatgtt caaaactatc tcatttgggc cagcagcacc tataacgttt
      361 tataagcttg tactgtccct cacagcgact cgtagcgagc tgtgcttctg aagctagctc
      421 ggctcttgat tggctgcttg cctcccgtgc gcggcgccgg cgcggaagct cctaaccggt
      481 ggtggcgatg tctagccggt ccaagcggca gtctcatggt tctacccgtg ggaagcgcga
      541 gtccgagtct cgaggtagct cgggtcgcat caagaaggag cgagaccgcg agaaggagcc
      601 cgaggcggcg agctcccggg gtagtccggt ccgcgtgaag cgggaggccg agccgactcc
      661 gcgagaggtc ccggcgcccg tgctcccggt tgtgcgggtg aagcgtgagc gtgaggccga
      721 cgaggactcg gagcccgagc gggaggtgcg agcaaagaat ggccgagtgg attctgaaga
      781 ccggaggagt cgtcactgtc catacttgga tactattaat aggagtgtgc tggacttcga
      841 ctttgagaaa ctctgttcca tttctctctc gcacatcaat gcatatgcct gcctggtgtg
      901 tggcaagtac tttcaaggcc ggggtttaaa gtctcatgcc tacatccaca gtgtccagtt
      961 cagccaccat gtcttcctca acctccacac tctcaagttt tactgccttc ctgacaacta
     1021 tgagatcatc gattcctcgc tggaggatat tacatatgtg ttgaagccta ctttcacaaa
     1081 gcagcaaatt gcaaacttgg acaagcaagc caaattgtcc cgggcatatg atggtaccac
     1141 ttacctgcca gggattgtgg gactgaacaa cataaaagcc aacgactatg caaatgctgt
     1201 gctgcaggca ctatctaacg ttcctcctct tcggaactac ttcctggagg aggacaatta
     1261 taagaacatc aagcgtcctc cgggggatat catgttcttg ttggtccagc gttttggaga
     1321 gctgatgaga aagctctgga acccccgaaa cttcaaggca catgtttctc ctcatgagat
     1381 gcttcaggcc gtcgtacttt gcagcaagaa gactttccaa attaccaaac aaggggatgg
     1441 agttgacttc ctgtcttggt ttctgaatgc tctgcactca gctctgggag gcaccaagaa
     1501 gaagaaaaag actattgtga atgatgtttt ccagggatca atgagaattt tcaccaaaaa
     1561 gcttcctcat cctgatctgc cagcggaaga gaaagagcag ctgctccata atgaggagta
     1621 ccaagagaca atggtggagt ccacgttcat gtacctgacg ctcgaccttc ccactgctcc
     1681 actctataag gacgagaagg agcagctcat tatcccgcaa gtgccactct tcaacatcct
     1741 ggccaagttc aacggcatca cggagaagga atacaagact tataaggaga acttcctgaa
     1801 gcgcttccag ctcaccaagc tgcctccata tctaatcttt tgcatcaaga gatttacaaa
     1861 gaacaacttc ttcgtggaga agaatccaac aattgtcaat ttccctatca caaatgtgga
     1921 tctgagagaa tacttatctg aagaagtcca agcagtccac aagaacacca cctatgacct
     1981 catcgccaac attgtgcatg atggcaagcc ttctgagggc tcctacagga tccatgtgct
     2041 tcatcatggg acaggcaagt ggtatgaact acaagacctc caggtgacgg acattctgcc
     2101 ccagatgatc accctgtctg aggcgtacat tcagcacatg ccttcccttt cagcatcagc
     2161 aggcagaact cttacagatg gatgccttat ttgaattgct gcaagtatca aagaacagaa
     2221 agttccgtgg aaacatcaag tcttgagatt ctaggagtaa acatggagtc agcagcaccc
     2281 ttatgccata ggtagatggt tttcctgtag ttccctccat ctcctcgtgg gacctttggg
     2341 atggattaaa tgtcctcctg tttttaaacc ag
//
