LOCUS       XM_238899               4356 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 35
            (Usp35), transcript variant X1, mRNA.
ACCESSION   XM_238899
VERSION     XM_238899.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 3, 2024 this sequence was replaced by
            NM_001427809.1.
            
            On Jan 21, 2021 this sequence version replaced XM_238899.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4356
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4356
                     /gene="Usp35"
                     /note="ubiquitin specific peptidase 35; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 1 long SRA read, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 65 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:308834"
                     /db_xref="RGD:1565984"
     CDS             422..3445
                     /gene="Usp35"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 35 isoform
                     X1"
                     /protein_id="XP_238899.4"
                     /db_xref="GeneID:308834"
                     /db_xref="RGD:1565984"
                     /translation="MDKILEAVVTSSYPASVKQGLVRRVLEAARQPLEREQCLALLAL
                     GARLYVGGTDELPRRVGCQLLHVAGRHHPDVFAEFFSARRVLRLLQGGAGPPGARALA
                     CVQLGLQLLPDGPAADEVFALLRREVLRTVCERPGPAACAQVARLLARHPRCVPDGAH
                     RLLFCQQLVRCLGRFRCPAEGEEGAVEFLEQAQQVSGLLAQLWRAQPAAILPCLKELF
                     AVISCTEEEPPSSALASVVQHLPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSW
                     PLGKNIDKWIIALLKGLAAVKKFSILIEVSLAKIEKVFSKLLYPIVRGAALCVLKYML
                     LTFQHSHEAFHLLLPHIPPMVAALVKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYE
                     PVMEAIKDLHIPNEDRIKQLLGQDAWTSQKSELAGFYPRLMAKSDTGKIGLINLGNTC
                     YVNSVLQALFMASDFRHCVLRLTENNSQPLMTKLQWLFAFLEHSQRPAISPENFLSAS
                     WTPWFSPGTQQDCSEYLKYLLDRLHEEEKTGTRICQKLKQSSLPSPQEELPSSNATSV
                     ERMFGGKIVTRICCLHCLNVSSREEAFTDLSLAFPPPERSRHRRLGSVMLPTEDVRAQ
                     ELTLAPRAPGAQRQRKHCITGDAPRTGLDIEGVDTVGNGGQSGQEKVEREQAGKEKEV
                     AEDREEEGPREEEKEEGEEKDKEKKEDEKEKEAEDGKEKEGDSLGPGTRKDAATPPRE
                     QACGPEGSRSVLDLVNYFLSPERLTAENRYYCESCASLQDAEKVVELSQGPCYLILTL
                     LRFSFDLRTMRRRKILDDVTIPLLLRLPLAGGQGQAYDLCSVVVHSGVSSESGHYYCY
                     AREGAARPAPVLGSTERPEPENQWYLFNDTRVSFSSFESVSNVTSFFPKDTAYVLFYR
                     QRPQEAPEAEPGSPRVRAEPTLHKDLMEAISKDNVLYLQEQEKEARSRAAYISTLPAP
                     PHWSRGFDEDKDEDEGSAGGCNPAGGNGDFHRLVF"
ORIGIN      
        1 tcagctggcc ttaaagggga cgcagcccga ctgggagctc tcagggtagc ccccgctcta
       61 gctccgcccc gtttccccgc acctcatccc tcccccagct ccgtcccgca gccatgagtc
      121 cgcgcagcag agttgcactg cccaggtcca tctagggttg tgcggagcgg ggtgggtgga
      181 gttggacatc actgtagcag cagcatccct gcgttctggg accccccggt aggggagcgg
      241 aggatccgcc ctgacctagc ctggcccagc ctagtctagc ctggcccaag cgccccgccc
      301 aggagtgggt tctaaggcaa gaaaactgag gctcttctac agtgtcagca cccagggatc
      361 tgggctgggt tgtggatcag agcctggccc tattccctgc ctctagccgc gcgcggccat
      421 catggacaag atcctggagg ccgtggtgac ttcgtcctac cctgcgagtg tgaagcaagg
      481 gctggtgcgg cgcgtgctgg aggctgcacg gcagcccttg gagcgggagc agtgcctggc
      541 gctgctggcc ctgggcgcgc gcctctacgt gggtggcacg gacgagctgc cgcgccgcgt
      601 gggctgccag ctgctgcacg tggcgggccg ccaccacccc gacgtcttcg ccgagttctt
      661 cagcgcgcgc cgcgttttgc gcctgctgca gggtggtgcg gggcccccgg gtgcgcgcgc
      721 gctggcctgc gtgcagctag gactgcagct gctgcccgac gggcccgcgg ccgacgaggt
      781 gttcgcgctg ctgcggcgcg aggtgctgcg caccgtgtgc gagcgcccgg gccccgccgc
      841 ctgcgcgcag gttgcccggc tgctggcgcg ccacccgcgc tgcgtacccg acggcgcgca
      901 ccgcctgctc ttctgccagc agctggtgcg ctgcctaggc cgcttccgct gcccagccga
      961 gggcgaagag ggcgcggtgg agttcctgga gcaggcccag caggtgagcg ggctcctggc
     1021 gcagctctgg cgcgcgcagc ccgcagccat cctgccctgc ctcaaggagc tgttcgcggt
     1081 catctcctgc acagaggagg agccaccgtc cagcgccttg gccagtgtgg tccagcacct
     1141 cccgttggaa ctcatggatg gtgtggtccg gaaccttagc aatgatgaca gcgtgacaga
     1201 ctcccagatg ctgactgcca ttagcaggat gatcgactgg gtgtcctggc ccctggggaa
     1261 gaacattgac aagtggatca ttgccctgct gaagggcctg gctgccgtta agaagttcag
     1321 catcttgatc gaggtttcgc tcgccaaaat tgagaaggtc ttctctaagc tgctgtaccc
     1381 cattgtgcgg ggagctgccc tctgtgtcct caagtacatg ctgctgacct tccagcattc
     1441 ccacgaggct ttccacctgc ttctccctca cattcctccc atggtggccg ctctggttaa
     1501 ggaggattcg aactctggga ccagctgcct ggagcagctg gcagagctgg tgcactgcat
     1561 ggtgtttcgg ttcccaggct tcccagacct gtatgaacct gtcatggaag ccatcaagga
     1621 cctccacatt cccaatgagg accgaatcaa gcagctgctg gggcaggatg cctggacctc
     1681 acagaagagt gaactggctg gcttctatcc ccggctcatg gccaagtcag acacgggcaa
     1741 gattggtttg atcaacttgg gcaacacatg ctatgtgaac agtgtccttc aggccttatt
     1801 catggcctct gactttcgac actgtgtgct gcgcttgact gagaacaact cccagccctt
     1861 gatgaccaag ctgcaatggc tctttgcctt cctggagcac agtcagaggc ctgccatctc
     1921 tcctgagaac ttcctctctg catcctggac accctggttc agccctggca cccagcagga
     1981 ctgttcagaa tatctgaagt acctgctgga tcggcttcat gaagaagaga aaactgggac
     2041 aaggatctgc cagaagctca agcagtccag cttgccatcc ccacaggaag agctccccag
     2101 ctccaatgca acatctgtgg agagaatgtt cggaggcaag attgtgacgc ggatatgctg
     2161 tctccactgc ctcaatgttt cctcaaggga ggaggccttc acagacctct ctttggcctt
     2221 ccctcctcct gagagaagtc gccaccgccg ccttggctct gtgatgctcc ccacggagga
     2281 tgttcgagcc caggagttga cgctggctcc cagagcccca ggggcgcaga ggcagaggaa
     2341 gcactgcatc acaggggacg ctcctcgcac tgggctggac attgaaggtg tggacaccgt
     2401 aggcaatggc ggacagagtg ggcaggagaa ggtagagagg gaacaggctg ggaaggagaa
     2461 ggaggtggca gaggacaggg aagaggaagg accaagggaa gaggagaaag aagaagggga
     2521 agagaaagac aaagagaaga aggaagatga gaaggaaaag gaagccgagg acggcaagga
     2581 gaaggaaggg gacagcttgg gaccagggac ccgcaaggat gctgccactc cacccaggga
     2641 gcaggcatgt ggccctgagg gttcccgctc tgtactggac ttggtcaact acttcctgtc
     2701 tcctgagagg ctgacagctg agaaccgcta ctactgtgag tcctgtgcct ccctgcagga
     2761 tgcggagaag gtggtggagc tgagccaggg tccatgctac ctcatcctta cactgctgcg
     2821 cttctccttt gacctgcgta ccatgcggcg gcgcaagatc ctggacgatg tcaccatccc
     2881 ccttctgctg cgcctgccac tggctggggg tcagggccag gcctatgacc tctgtagtgt
     2941 ggtcgtacac tctggagtgt cctcagagag tggccactat tactgctatg ctcgtgaggg
     3001 tgctgctcgg ccagctcctg tcctgggatc cacagagagg cctgagcccg agaaccagtg
     3061 gtacctgttt aatgataccc gggtgtcgtt ctcatccttt gagtctgtca gcaatgtcac
     3121 ctcctttttc cctaaggaca ctgcctatgt gctcttctac cgccagaggc cccaggaggc
     3181 ccctgaggct gagcctggtt ctcctagagt ccgagcagag cctaccctcc acaaggacct
     3241 gatggaggcc atttccaaag acaatgtcct ctacctgcag gaacaggaga aggaggcacg
     3301 gagcagggca gcttacatct ctacactccc tgcccctcca cactggagta gaggcttcga
     3361 tgaagataaa gatgaggatg aaggctcggc agggggttgc aaccctgcag ggggcaatgg
     3421 tgacttccac agactggtct tctaatggga actcccactt gtgggggtat cataaccaac
     3481 ctcagagtgg gccgggtggg gctcagggcc caggtcgaac actgccacct ggggtcttag
     3541 agagctgtgg aggcaaaccc gaggtgaaac aggtctttct gagggcaagg aggatgaaga
     3601 gggaccattt gggatgtcag tctgtagctt gaagtacaca gagaaactga aacccaaagc
     3661 tataggcatt catcctatta aactattagt caagtgtcct gactaactgg gagcactgtg
     3721 aatgagtcta ctctgggctt tgcctccctg cgggccagcc ctggaaaggc cgtcggctta
     3781 ggagccaggg tggtgtcagc ttggtgtcct gtgttcagta gcacttcttt ctagttcctt
     3841 cacccagtac ttcctcaata ggagaaaaag cacagcggaa gccaagcctt tggaataaga
     3901 aggaggctgt gtccccaatg tccaccctct tgtttcttta aggggggtgt cagcacctgc
     3961 tgtgtgtttt tgaggcatgt gaatggaagg cagcatagca caggatcaga gacaagaaac
     4021 ttaccacatg cccctcccct accccaagca agtgacactg tgggagagct cctgccctcc
     4081 ctagcctgcc tcagtgccta agatgctgcc attgcatccc tgtctagtta aggtacacag
     4141 tccttatctt actggagaca ttagtctatc agaaagccat tgtcatctga ggaagctagc
     4201 tggcttggct cctctgatga agtgtgaggg ctgggtaggt atgaaccatg taatgcaccc
     4261 gacctcatcg tgccctgaga ctactatagc cccttctcag taaagagaag aaacctgtgt
     4321 tcttaaatag gaataaactt gcttctctga aggcca
//
