LOCUS       XM_039102498            3035 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 33
            (Usp33), transcript variant X3, mRNA.
ACCESSION   XM_039102498
VERSION     XM_039102498.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102498.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3035
                     /gene="Usp33"
                     /note="ubiquitin specific peptidase 33; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 30 ESTs, 5 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 55 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:310960"
                     /db_xref="RGD:1307848"
     CDS             355..2775
                     /gene="Usp33"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 33 isoform
                     X3"
                     /protein_id="XP_038958426.1"
                     /db_xref="GeneID:310960"
                     /db_xref="RGD:1307848"
                     /translation="MTTFRNHCPHLDSVGEITKEDLIQKSHGACQDCKVRGPNLWACL
                     ENRCSYVGCGESQDHSTIHSKKTKHYLTVNLTTLRVWCYACSKEVFLDRKLGTPPSLP
                     HVRQPQQTQENSVQDFKIPSNTALKTPLVAVFEDLDIEVEEEDELKARGLTGLKNIGN
                     TCYMNAALQALSNCPPLTQFFLDCGGLARTDKKPAICKSYLKLMTELWHKSRPGSVVP
                     ANLFQGIKTVNPTFRGYSQQDAQEFLRCLMDLLHEELKEQVMEIEEEPQALTSEETVE
                     EEKSQSDVDFQSCESCSSSSEKGENESVSKGGPEDSTETTMLIQDEEDLEMAKDWQKE
                     KMCNKSNKADSDGEPDKDRDTVCETVDLNSQETVKVQIHGRASEYITDVHLNDLSTPQ
                     ILPSNESVNPRLSASPPKSGNLWPGLTPPHKKAQSSSPKRKKQHKKYRSVISDIFDGT
                     IISSVQCLTCDRVSVTLETFQDLSLPIPGKEDLAKLHSSSHPTIVKAGSCGEAYAPQG
                     WIAFFMEYVKRFVVSCVPSWFWGPVVTLQDCLAAFFARDELKGDNMYSCEKCKKLRNG
                     VKFCKVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQIVTY
                     DLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKS
                     SEEAQRERRRISNLLNIMEPSLLQFYISRQWLNKFKTFAEPGPISNNDFLCIHGGIPP
                     RKASYIEDLVLMLPQNIWDNLYSRYGGGPAVNHLYICHTCQIEAEKIEKRRKTELEIF
                     IRKEGFSV"
ORIGIN      
        1 gtcccgcccc cagacgcccg cagcggccgc ggagacaccg gaaggagcgg cggctgctaa
       61 gggaagcgtc gggcagcggc cgggattctg cgggccgcgc tgcggaaccg ttttgcggcc
      121 ctgtgaatcc gagcgctcag gctgcgagga ggagcgcggc gggcggcggg cggcgggcgg
      181 cgggctgagt tctggaagtt tctatgtgtg ctggtgaagg agaaccatga tcatcgttct
      241 tagccagctg tgaactgtgc aagctaccac agcagctgtc ttggcagaca cacccactgg
      301 ttttgcctga ttggaaaagc cttgagaaag agaaaaaaaa aaaaaactaa gaaaatgacg
      361 acttttcgaa atcattgtcc acatttggat tcagttggtg aaataacaaa agaggatttg
      421 atacaaaaat ctcatggtgc ttgtcaggac tgtaaagtca gaggaccaaa cctgtgggca
      481 tgcctagaga ataggtgttc ctatgttggc tgcggggagt cacaagatca tagcaccata
      541 cactcgaaga agacaaagca ttatctaact gtgaacctca ccacccttcg agtatggtgt
      601 tatgcttgca gcaaagaagt attcttggat agaaaattag gaactcctcc ttcattacct
      661 catgtaagac agcctcaaca aacacaagaa aacagtgtcc aggattttaa aatacccagt
      721 aatacagcat tgaaaacccc tctggttgct gtatttgaag atctggatat agaagtggaa
      781 gaggaagatg agctgaaggc tagaggcctg acaggtttga aaaacattgg aaatacttgc
      841 tatatgaatg ccgctctgca agctctctct aactgcccac ctttgacaca gttctttctt
      901 gattgtggag gactggctag aacagataag aaaccagcca tttgtaaaag ttatctcaaa
      961 ctaatgacag aattgtggca caagagcagg ccaggatctg ttgtgcctgc taatctgttc
     1021 caaggaatta aaactgtaaa tccaactttt cgaggctatt ctcagcagga tgcccaggaa
     1081 ttccttcgct gtttaatgga tctgcttcat gaagagttga aggagcaggt catggaaata
     1141 gaggaagagc ctcaagcact aacttctgag gagacagtgg aggaagagaa gagccagtca
     1201 gatgtggatt ttcagtcctg cgagtcatgt agcagcagca gtgagaaagg ggaaaatgag
     1261 agtgtctcta agggcggccc tgaagacagc actgagacca ccatgctcat tcaggatgag
     1321 gaggacctag agatggccaa agactggcaa aaagagaaga tgtgcaacaa gagcaacaaa
     1381 gcagattctg acggagaacc ggataaagac agagacacgg tgtgtgaaac agttgaccta
     1441 aacagccagg agaccgtcaa ggtgcagata cacggcagag cctcagaata tatcactgat
     1501 gtccatttga atgacctatc tacaccacag atccttccat caaatgaaag tgttaatcca
     1561 cgtttatcag caagtcctcc taagtcaggc aatctgtggc caggattgac acctccacac
     1621 aagaaagctc agtcttcatc tccaaagagg aaaaagcagc ataagaagta cagaagtgtc
     1681 atctctgaca tatttgatgg gacaatcatt agttcagtac agtgtctgac gtgtgatagg
     1741 gtgtctgtaa ccctcgagac ctttcaggat ctgtccttgc cgattcctgg caaggaagac
     1801 ctggctaagc tgcactcctc cagtcaccca actatagtca aagcagggtc gtgtggcgaa
     1861 gcctacgctc cacaggggtg gatagctttc ttcatggagt acgtgaagag gtttgttgtc
     1921 tcatgtgtcc ctagctggtt ttggggtcca gtagtaacct tgcaagattg tcttgctgcc
     1981 ttcttcgcca gagatgaact taaaggtgat aatatgtaca gttgtgaaaa atgcaaaaag
     2041 ttgaggaatg gagtaaagtt ttgtaaagta caaaagtttc ctgagatttt gtgtatccac
     2101 cttaaaagat ttcgacatga actgatgttt tccaccaaaa ttagcaccca tgtttccttc
     2161 cccctggaag gcctggacct tcagccattt cttgcaaagg atagcccagc tcagatcgtg
     2221 acatatgatc tcctgtcagt catctgtcat catgggactg caagtagtgg gcactacatt
     2281 gcctactgca gaaacaattt aaataacctg tggtatgagt ttgatgacca gagcgtcact
     2341 gaagtttcag agtccaccgt acagaatgcc gaagcctacg tccttttcta caggaagagc
     2401 agtgaagagg cacaaaggga gaggcgaagg atatccaatt tgttgaacat aatggagcca
     2461 agcctccttc agttctatat atctcgacag tggttgaata aatttaagac ctttgctgaa
     2521 cctggcccta tttcaaataa tgactttctc tgtattcatg gaggtattcc tccacgaaaa
     2581 gcaagttata ttgaagactt agttttgatg ctgcctcaga acatttggga taacctctac
     2641 agcaggtatg gaggagggcc tgctgtcaac cacctctaca tttgtcacac ttgccaaatt
     2701 gaggcagaga agattgaaaa acgaagaaaa actgaattgg aaatttttat tcggaaagag
     2761 ggtttctctg tgtaaccttg ggtgtcctgg aactcactgt gtagaccagg cttgcctgct
     2821 tttgtgctac agagcatggg tggcggacgg aggacaactt gagggagaga cttctttgat
     2881 tccatcatgt gggtcctgag gagaccaaga cccactgagc catcttgtca aactcaggat
     2941 ttatttgtaa ctggggattt aaacattgat taaaaagcta gaaagagttt cctagaccac
     3001 aggccttatc tgaggttgtg acgttgttct tacct
//
