LOCUS       NM_001108465            6577 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ubiquitin specific peptidase 29 (Usp29), mRNA.
ACCESSION   NM_001108465 XM_001068006 XM_341774
VERSION     NM_001108465.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6577)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474102.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001068006.1, XM_341774.3.
            
            ##Evidence-Data-START##
            CDS exon combination :: CF977451.1, BF563204.1 [ECO:0000331]
            RNAseq introns       :: partial sample support SAMD00132261,
                                    SAMD00132265 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..6577
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..6577
                     /gene="Usp29"
                     /note="ubiquitin specific peptidase 29"
                     /db_xref="GeneID:361495"
                     /db_xref="RGD:1306648"
     exon            1..105
                     /gene="Usp29"
                     /inference="alignment:Splign:2.1.0"
     exon            106..172
                     /gene="Usp29"
                     /inference="alignment:Splign:2.1.0"
     exon            173..257
                     /gene="Usp29"
                     /inference="alignment:Splign:2.1.0"
     exon            258..323
                     /gene="Usp29"
                     /inference="alignment:Splign:2.1.0"
     exon            324..524
                     /gene="Usp29"
                     /inference="alignment:Splign:2.1.0"
     exon            525..6577
                     /gene="Usp29"
                     /inference="alignment:Splign:2.1.0"
     CDS             554..3172
                     /gene="Usp29"
                     /EC_number="3.4.19.12"
                     /note="ubiquitin specific protease 29"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 29"
                     /protein_id="NP_001101935.1"
                     /db_xref="GeneID:361495"
                     /db_xref="RGD:1306648"
                     /translation="MAHLKIHGLVQIRSTNRSKHTRASQWKEAVIEIVERKQKVNLVV
                     SFKLEERRRVFQLGDNVTGVVVSGELGLYHLDLTLRDDTSLLIDKLSSADVEHLKSFL
                     DSSTPCESQQPMESMSNQDTLEISDPFFRENQDVVCVSLNTALESGTLLSRKMPLCMS
                     NTTGSHTEKKRGEKQGRKRKTEPSPSTVEVTTKDILKENNPEQKKKSRRYYSRNRGGK
                     AEKAVALREQEKRNNWKLEPAFSSKVYGKSTLDGTVLPIATCSDDRDLSIFGLEIITH
                     NGIQPPPDNYLKQLKREGFPNLGNTCYMNSILQSVFGIPTFAKDLLTQGIPWEKVSYD
                     DLIMPLSQLLVLKDIRDIEIKGELLTSVKKSISTVADTFSGNEQNDAHEFLSLCLDQL
                     KLNMEKVNAMWDTERKNEPTCAGAKRFVCPVGANFEFELHSSIICEGCGEATLKTEVS
                     NYLSIDLHHGTKTHPLSIQKSFDLFFTPEKIEHNCEKCKNKNSVLKYTLRRLPRVLIV
                     HLKRYQVTTDLLPVKSEQPVEISQYLNISSHCHENRKLPFPLINTPPKGDYDIPNVSP
                     GLMPEIFSQSMSSKKVISESSDPLVLQVGSSVDAEIQSFQIMYEDESEEEQQRGLESG
                     SMLDPELLKTENRVFRQKISPAPDSMMGDGYSFLPMLCEPMSIQDPGLAEMGLQEVPE
                     NPEFKYYGKPDGRTNSELSKLHQNHGGRIKGSYLPASFANMRSSLEDPEKDLSRSSEF
                     EEDDPHSFALGSDESKDEEMGDNLHNYRLVSVVSHFGSSPNSGHYVSDVYDFQRQAWL
                     LYSDVQVFENPDPSSQENRLHTGYIFFYMHNEIFEELLKKASECKVLSTSKEEKRDID
                     YFSTLLNGLTYILEEF"
ORIGIN      
        1 aagagagctt caactggatc ctcagcaggt gatgccatct ggtccagggg ctctcttgtc
       61 ttgcactgtg gacattcagc actggagaat tctttgcttt gctttctcaa tctggtctac
      121 aaagtgagtt ccaggacagc caggacttta gagggaaaac ctcatctcaa aggtcctgga
      181 agtggaactt aacgtcttca aacttggccg aagtctcctt tatccactga gccacctcac
      241 tggtcctaca aatacagtta acagcctgca gcaggaccgt gaccagccct ctacagctgt
      301 gatattcctg agtagaaacc tgggacttgg gtctgcatct ggaatctgca atcagaaagg
      361 ccagcaccgg aggtgacgag gactcaacct catattgcca caactgtctc attggcataa
      421 gagactagag gttgaccagg acttccaccg tctccggcac aacagtgaag acagcagagg
      481 caccagagcc caacatcaca gcattttacc taattttact tccgatcgta catgttttat
      541 ttgtgaagaa agaatggctc acctaaagat acatggtttg gtccagatcc gcagcacaaa
      601 caggagcaag cacaccaggg catctcagtg gaaagaagca gtcatcgaaa tagtagaaag
      661 aaaacagaaa gttaatctgg tggtttcttt taagttggag gagaggagaa gggtttttca
      721 gctgggtgat aacgttacag gtgtagtggt tagtggcgag ctgggactgt atcatctgga
      781 tttaactttg agagatgaca cgtccttact cattgacaag ttatcctccg cagatgttga
      841 gcatttgaag tcattcctgg attcgtccac tccatgtgaa tcccagcaac ccatggagtc
      901 catgagtaat caggatactc ttgaaatcag cgacccattt ttcagggaga accaagacgt
      961 agtctgtgtt tccctgaata ctgccctaga gagtgggaca ctgctctccc ggaagatgcc
     1021 actctgtatg tcaaacacca cgggcagtca tactgaaaaa aagagaggag aaaaacaagg
     1081 cagaaaaagg aagacagaac catcaccatc cactgtagaa gtgaccacca aggatattct
     1141 caaagaaaat aatcctgaac aaaaaaagaa atccaggcgg tattactcca ggaatagagg
     1201 aggcaaagcc gagaaagctg tggctttaag ggaacaagaa aagcgcaaca attggaagct
     1261 tgaacctgct ttcagttcca aagtctatgg aaagtctacc ctagacggca ctgttctccc
     1321 aatcgcgacg tgctctgatg acagagattt atcgatattt ggcctggaga tcataacaca
     1381 taacggaatc cagcctcctc cagacaatta cctgaagcag ctaaagcgtg aaggcttccc
     1441 caatttggga aatacttgct acatgaattc catcttacaa tctgtctttg gaattccaac
     1501 ctttgcaaag gacttactca ctcaaggtat cccatgggag aaagtttcct acgatgacct
     1561 tatcatgccc ttaagccagc ttcttgtctt gaaagacatt cgagatatag agatcaaggg
     1621 cgagttactc accagtgtga agaagtccat ctccacagtt gcagacacat tctcgggcaa
     1681 cgaacagaat gatgcccatg agtttttaag tctgtgttta gaccagctga aactgaacat
     1741 ggaaaaagta aatgccatgt gggacactga gaggaaaaat gaaccaacgt gtgctggagc
     1801 caaaaggttt gtttgtcccg ttggtgctaa ttttgaattt gagctgcata gctccatcat
     1861 ctgtgaaggc tgtggggagg ctactctcaa gaccgaagtg agcaattacc tctccatcga
     1921 cctgcaccac gggacaaaaa cacaccctct ctcaattcaa aagtcttttg atctgttctt
     1981 cacaccagaa aaaattgagc ataactgcga gaaatgcaag aacaagaatt ctgttctcaa
     2041 gtacacattg aggagactcc ccagggtcct cattgttcat ctgaaacgct accaagttac
     2101 cactgacttg ttgccagtga agagtgagca gccagttgag atttctcagt atttgaatat
     2161 atcttcccat tgccatgaaa acaggaagtt accatttccc ttgatcaata caccccctaa
     2221 gggagactat gatatcccaa atgtctctcc agggctgatg cctgagatct ttagccagtc
     2281 aatgtcgtct aagaaggtga tttctgaatc cagtgacccc ctggttctac aggttggatc
     2341 cagcgtggat gccgaaatac aaagcttcca gataatgtat gaggatgaaa gtgaagaaga
     2401 gcagcagaga ggcctggaaa gtggttctat gctggaccca gaactattga agacagaaaa
     2461 cagggtattc agacagaaga tatctccagc acctgactca atgatgggtg acggatacag
     2521 cttccttcct atgctctgtg agcctatgag catccaagac ccaggtcttg cagagatggg
     2581 tcttcaagag gttccagaga atccagaatt taagtactat ggaaagccag atggccgtac
     2641 taacagtgag ctgtcaaaac tccaccagaa tcatgggggt cgaatcaagg gttcgtatct
     2701 accggcatca tttgcaaata tgagaagttc tctggaagac ccagagaagg acctgagcag
     2761 gtcttcagaa tttgaggaag atgatccgca ttcctttgca ttgggttctg atgaatcaaa
     2821 ggatgaggag atgggagaca atcttcataa ttacaggctc gtcagtgttg tcagccattt
     2881 tgggagctcc ccaaattcag gccattacgt aagtgatgtg tatgacttcc aaaggcaagc
     2941 ctggctcctt tacagtgatg tccaagtgtt cgagaatcca gatccctcca gtcaggagaa
     3001 taggcttcac actggataca ttttctttta catgcataat gagatttttg aggaactgtt
     3061 gaaaaaagca tcggagtgca aggtccttag cacatctaaa gaagaaaaga gggacataga
     3121 ttatttctca acactgctta atggccttac atatatccta gaagagttct aaatcttgcc
     3181 cataacgaag aagagtcaca taactcaaga tgaaaactcg gccaaaaaca aaaaatgaac
     3241 ggacatacta aaacagaaac ccaggccttg ctatcgcagg ctatgcacca ttctttccta
     3301 caaggctaaa tggtgctttt cttgttttgt ggtggtttta atttcttcac agacgttaat
     3361 aaaactcatc attttgagac taccatttgt taactatgat aatagggaat ctggagagaa
     3421 ggtacagtag ttgagagtgc agactactct gagagaggac ccaagcttga tttcccaata
     3481 cctatgttag gtgtgactgg cgtgtccttg gaggcaggag gcatgagata gcctagaatg
     3541 ggaatacaag tgatagtaag ctgcctgact tgggtgctgg gaactgaact taggttttct
     3601 gcaagagcag tttccacttt taaacactaa gccatctctt ggctttcatt ctaattttag
     3661 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgcg cgtgctatcc ataagagcaa
     3721 agcatgatgc ttttaaaatg ttgttctgaa ccagtacaac acagcaagga gctaattata
     3781 agttctaatg ctggggttca acgtcagaaa caataccagt agttacttaa gagtttgaga
     3841 aatatttatt tagtgtgtgg agtgtcttat tgaattttag tgtatataaa tcactcatgt
     3901 catccagagc ctcctcattg gttttatccc aaattcatat gtgctgttct tttgtcagtt
     3961 tattaaaacc attgttttcc atgtgtgttt gtgattcatc catgagatta tatagctgcc
     4021 caccacctgg ttttgtgctt ctcagaatta cagggtacat taaagttaca caggaaatga
     4081 aataggtagc atttgcaaat tgcaaggcac tctaaggact cagtggggaa aaacacctgc
     4141 cttcaagccc tgtgacctaa ctccaatgag ttgtcctctg acctctaggg aagctatcag
     4201 atgaacaccc atgaataaat gaatgaataa aatctaactt tctaaaggtt tacccattat
     4261 gtgtatagtg ttctgcctac ctgtaggcct acacatcaga agagagcact agatctcatt
     4321 atagatggtt gtgagcctca atgtggttgc tgggaattga atttggggct cgtagaacag
     4381 ccagtgctct taactgctga accatctctc tagcccctaa aatttaatct tttgagatgt
     4441 tactatgtag ctctggctgt cttggaactc tatgtagatc aggctatccc taaactcaag
     4501 aaattttccc tggccctgcc tcttgggtgc tggtattgaa ggtttgcacc cccatgccta
     4561 acccaatgaa aattttaaag cactttaaag tgccaaatat atttgttaga tttaaatcat
     4621 ggttgacatg agaaatgggt ggttcaaggt agaggacaag ggctagatca tcttgcaggt
     4681 gagagcttca ttagaaaata gtaataccac aaacagtatg gaggggttct aaagagaacc
     4741 ttcaactcaa gacaaggcaa ggttcccctg agtttccaaa ggaaggaaga agcctcgtgc
     4801 catgaggcag ttaaatagta gtgcatgctt tctactgatt ctgcaagggg aagtacaaca
     4861 agctgtctac actgtgtaac ctgatctgag acaccaacac cacatctaac agtgtttcaa
     4921 acatgaaaaa atagtacaga ggcactttca agggcctagg gagatagttc agtaggtaag
     4981 agtcatgtgc aagcatgggg acttgagttc aaatccccag caccctggtg atggccatgc
     5041 atgtatgcct gtgactctag caccagacag caaaggcaga ttctagagct cactagccaa
     5101 ccagcagcca aaatggtaag agtatggcac agtgagattg tatttaaaaa acaaaaatag
     5161 gaagtgggag aagaaagcac tgagtgtcct ctggccttca catgtgcatg catgcaccca
     5221 tgtgcaaaca ttacacaagt gttattttcc aaattcctct ttgggcctgg agacatggtt
     5281 aagattactt tctactcttt cagagacccc aggttcgatt cccagtattc gcatggggtc
     5341 acaccatctg taacttcagt tccagaggat caaatggcct cttctgtctt tgtagtgtac
     5401 agacaaaaca cctatatgta ttaaaacatt gcttaattct accttcaaag gggtaccata
     5461 tattcatagc ccgtggctaa tcgtgaaaag cttataaaat tcacagtgct aatatactat
     5521 ataagagcat gtacaaacgt ttagaagatt tttgaggtta taagaaaaat actagctgga
     5581 gagatgctca gcttttaaga gcactgctgc tcctccagat ggacccaggt tcagttccca
     5641 gcacccacat ggcaactcat gactctgcaa ctccagttac aaagggatct gataccctca
     5701 cacagacata catgcaaaca aaacaccagt gcacacaaca ttaatgtcaa ttataaaaaa
     5761 aaccatctac catctaattt gggttgatta gactgctgag cagttaagaa caccgtgtgc
     5821 tttttcagag gtcctgagtt caatgcccac ctaccatatg gtggctcagg accatctata
     5881 aagggatctg atgccctctt ctcttatgaa ggtatgcatg cagacaacat tcctacatta
     5941 aattcattaa ataaatacta aaagcctggt aatttataaa atatggggca aaattaagtg
     6001 agggtgattt ggggaaaaga ttagtctaga acagcagttc tcagcctgta ggttgccatt
     6061 cctttggggt ggtggtggtc aaaggacctt tttgcaggag attgcctatc agataggcag
     6121 tatgttggga gcaggcaaaa gaaacccacc ctaaatacat ccgcttcatt tttcagactc
     6181 catttaatca tggggagaga ctaagttcaa gctccctagc cctaggggag ctggggactt
     6241 cctaatagct gaatagcttc tattgtaagg aaacagttgt ctgagtccaa acaactcaag
     6301 aacaactcca tcttgttggc agggtcatta ctaagttcat gttcccgggt ccaggaacct
     6361 actcctaacc tgtttggtga aaactccctt gctcaacccc ttgtgtcaaa atatggtaga
     6421 gcagtgctac aacctacccc gctccccctt ggtttgtggt cttgtccttt aaatatgttg
     6481 tacaatttcc cttcaggatg cagttcagct tctgagtctg ttctttggct gtgattgatc
     6541 agtagtggct taattacaat aaatgttttt catctgc
//
