LOCUS       XM_039081444            2792 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 28
            (Usp28), transcript variant X9, mRNA.
ACCESSION   XM_039081444
VERSION     XM_039081444.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081444.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2792
                     /gene="Usp28"
                     /note="ubiquitin specific peptidase 28; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:315639"
                     /db_xref="RGD:1311555"
     CDS             175..2724
                     /gene="Usp28"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 28 isoform
                     X9"
                     /protein_id="XP_038937372.1"
                     /db_xref="GeneID:315639"
                     /db_xref="RGD:1311555"
                     /translation="MTAELQQDDAAGAADGHGSSCQMLLNQLREITGIQDPSFLHEAL
                     KASNGDITQAVSLLTDQRVKEPSHDTAATEPSEVEESATSKDLLAKVIDLTHDNKDDL
                     QAAIALSLLESPNIQTDSRDLNRIHEANSAETKRSKRKRCEVWGENHNPNNWRRVDGW
                     PVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLSYSLPQNILENCRSHTEKRNIMFMQEL
                     QYLFALLLGSNRKFVDPSAALDLLKGAFRSSEEQQQDVSEFTHKLLDWLEDAFQLAVN
                     VNSNPRTKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYHNLDECLEGA
                     MVEGDIALLPSDRSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQV
                     IYMDRYMYKSKELIRSKRESIRKLKEEIQVLQQKLERYVKYGSGPSRFPLPDMLKYVI
                     EFASTKPASESCLSGSVEHMTLPLPSVHCPISDLTAKESSSPKSCSQNAEGSFSSPED
                     ALPNSEVMNGPFTSPHSSLEMPAPPPAPRTVTDEEMNFVKTCLQRWRSEIEQDIQDLK
                     NCISSTTQAIEQMYCDPLLRQVPYRLHAVLVHEGQASAGHYWAYIYNQPRQIWLKYND
                     ISVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCSAEAAHGESDQTAEVEALSVE
                     LRQYIQEDNWRFEQEVEEWEEEQSCKIPQMESSPNSSSQDFSTSQESSAASSHGVRCL
                     SSEHAVIAKEQTAQAIANTAHAYEKSGVEAALSEHKEAEPEKPQETNLAEQSEQAAEV
                     KDTEAAAPPNSEVSEVEIPSVGRILVRSDADGYDEEVQRRVQGSCVLYFKR"
ORIGIN      
        1 agtgttggga gcgggctggc gtgggcgggg cttccagcgc gcgccgcggg cgggggcggg
       61 acgtgtgggc ggtgcctccc ggtactccgg ggcttcgggg gcggcggtgg tggcggtggt
      121 gaccgcggcg aagacgacaa cgagagtggg gctacacgcg gaggcaccac ggccatgact
      181 gcggagctgc agcaggacga cgcggcgggg gcggcggacg gccatggctc gagctgccag
      241 atgctgttaa atcagctgcg agaaatcacg ggcatccagg atccttcctt tcttcatgaa
      301 gcattaaagg ccagtaatgg tgacatcacc caggctgtca gccttctcac agaccaaaga
      361 gttaaggagc ccagtcacga cacagctgct acagaaccat ctgaagtaga agagagtgct
      421 accagcaaag atctcttagc aaaagtgata gaccttacac atgacaacaa agatgacctt
      481 caggcagcca ttgccttgag tctcctggag tctcctaaca ttcagactga cagcagagat
      541 cttaatagaa tacatgaagc taactctgca gagactaaac gatcaaagag aaaacgctgt
      601 gaagtttggg gagaaaacca caatcccaat aactggagga gagtggatgg ttggccagtt
      661 gggctgaaaa atgttggcaa cacatgttgg ttcagtgctg ttattcagtc tctctttcag
      721 ttgcctgaat ttcgaagact tgttctcagt tacagcctgc cacagaacat tcttgaaaat
      781 tgtcgaagtc acactgaaaa aagaaatatc atgtttatgc aagagcttca gtatttattt
      841 gctctgttat tgggatcaaa tcggaaattt gtagatcctt ctgctgccct ggatctactg
      901 aagggggcct tccgatcctc agaggagcaa cagcaagatg tgagtgaatt cacacacaag
      961 ctcctggatt ggctggagga tgcgttccag ctagctgtta atgttaacag caatcccagg
     1021 actaaatctg aaaaccccat ggtgcagctg ttctacggta ccttcctgac agaaggggtc
     1081 cgagaaggaa aacccttttg taacaacgag accttcggcc agtaccctct tcaggtaaac
     1141 ggttaccaca acttagacga gtgtttggaa ggggccatgg tggaaggtga cattgcgctg
     1201 cttccttctg atcgctcagt gaaatacgga caagagcgtt ggtttacaaa gctgcctcca
     1261 gtgttgacct tcgaactctc cagatttgag tttaatcagt ctcttgggca gcctgagaaa
     1321 attcataata agctggaatt tcctcaggtt atttatatgg ataggtacat gtacaaaagc
     1381 aaagagctta tccgaagtaa gagagagagc attcgaaagt tgaaggagga aatacaagtt
     1441 ctgcagcaga aattagaaag gtatgtgaag tacggctccg gtccatctcg cttcccactc
     1501 cccgacatgt tgaaatacgt tattgaattt gccagtacaa aacctgcctc tgaaagctgt
     1561 ctgtctggaa gtgttgagca tatgacgtta ccacttcctt ctgtgcactg cccgatttct
     1621 gacctcacag ccaaggaaag ttcaagtccc aaaagctgct ctcagaatgc tgagggttcc
     1681 ttttcctctc cggaagatgc tctacccaac tctgaggtaa tgaatgggcc atttacttct
     1741 cctcactctt ccctggaaat gcctgcaccc ccaccagctc ctcggacagt cacagatgag
     1801 gaaatgaatt tcgttaagac ctgtcttcag aggtggcgga gtgaaattga acaggatata
     1861 caagacttaa agaattgtat ctcgagcacc acccaggcta ttgagcagat gtactgtgat
     1921 cctcttcttc gtcaggtgcc ttatcgctta catgcagttc ttgttcatga aggacaagcc
     1981 agtgcagggc actactgggc gtacatctat aaccagcccc ggcagatctg gctcaaatac
     2041 aacgacatct ctgtcactga gtcttcctgg gaagaacttg aaagagattc ttacgggggc
     2101 ctgagaaatg tcagcgcata ctgcttgatg tatatcaatg acaagttgcc ccactgcagt
     2161 gcagaggcag cgcatggtga atctgatcag actgcagaag tggaagccct gtctgtggaa
     2221 ctcaggcagt acattcagga agataactgg aggtttgagc aagaggtgga ggaatgggag
     2281 gaagaacagt cctgtaagat cccacagatg gagtcctccc caaactcttc ctcacaggat
     2341 ttttccacat cacaagagtc ttcagcagcg tcctcgcatg gcgttcgatg tttgtcttct
     2401 gaacatgctg tgattgcaaa ggagcagact gcccaggcca tcgcaaacac ggctcatgcc
     2461 tatgagaaga gcggggtaga agcagccttg agtgagcata aggaagctga acccgagaag
     2521 ccccaggaaa caaaccttgc agagcagtca gaacaggctg cagaggtcaa agacacagag
     2581 gctgctgccc cacctaactc tgaggtctct gaagtggaga tccccagtgt gggaaggatt
     2641 ctggttagat ctgatgcaga tggctatgat gaggaggtac agaggcgagt gcagggtagc
     2701 tgtgtgttgt atttcaaaag gtgatgctga gccctgccat gcaaggggtc ctcctggcca
     2761 tagctaaggc gcgccagacc tttgaccgag ac
//
