LOCUS       XM_006243012            4186 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 28
            (Usp28), transcript variant X7, mRNA.
ACCESSION   XM_006243012
VERSION     XM_006243012.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006243012.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006243012.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4186
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4186
                     /gene="Usp28"
                     /note="ubiquitin specific peptidase 28; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 25 ESTs, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     136 samples with support for all annotated introns"
                     /db_xref="GeneID:315639"
                     /db_xref="RGD:1311555"
     CDS             112..3264
                     /gene="Usp28"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 28 isoform
                     X7"
                     /protein_id="XP_006243074.1"
                     /db_xref="GeneID:315639"
                     /db_xref="RGD:1311555"
                     /translation="MTAELQQDDAAGAADGHGSSCQMLLNQLREITGIQDPSFLHEAL
                     KASNGDITQAVSLLTDQRVKEPSHDTAATEPSEVEESATSKDLLAKVIDLTHDNKDDL
                     QAAIALSLLESPNIQTDSRDLNRIHEANSAETKRSKRKRCEVWGENHNPNNWRRVDGW
                     PVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLSYSLPQNILENCRSHTEKRNIMFMQEL
                     QYLFALLLGSNRKFVDPSAALDLLKGAFRSSEEQQQDVSEFTHKLLDWLEDAFQLAVN
                     VNNPRTKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYHNLDECLEGAM
                     VEGDIALLPSDRSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQVI
                     YMDRYMYKSKELIRSKRESIRKLKEEIQVLQQKLERYVKYGSGPSRFPLPDMLKYVIE
                     FASTKPASESCLSGSVEHMTLPLPSVHCPISDLTAKESSSPKSCSQNAEGSFSSPEDA
                     LPNSEVMNGPFTSPHSSLEMPAPPPAPRTVTDEEMNFVKTCLQRWRSEIEQDIQDLKN
                     CISSTTQAIEQMYCDPLLRQVPYRLHAVLVHEGQASAGHYWAYIYNQPRQIWLKYNDI
                     SVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCSAEAAHGESDQTAEVEALSVEL
                     RQYIQEDNWRFEQEVEEWEEEQSCKIPQMESSPNSSSQDFSTSQESSAASSHGVRCLS
                     SEHAVIAKEQTAQAIANTAHAYEKSGVEAALSEAFHEEYSRLYQLAKETPTSHSDPRL
                     QHVLVYFFQNEAPKRVVERTLLEQFADRNLSYDERSISIMKVAQAKLMEIGPEDMNME
                     EYKRWHEDYSLFRKVSVYLLTGLELFQKGKYQEALSYLVYAYQSNAGLLVKGPRRGVK
                     ESVIALYRRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDD
                     LDAIEVMRNHWCSYLGKDIAENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDL
                     CSRFAAVMESIQGVSTVTVK"
ORIGIN      
        1 tgtgggcggt gcctcccggt actccggggc ttcgggggcg gcggtggtgg cggtggtgac
       61 cgcggcgaag acgacaacga gagtggggct acacgcggag gcaccacggc catgactgcg
      121 gagctgcagc aggacgacgc ggcgggggcg gcggacggcc atggctcgag ctgccagatg
      181 ctgttaaatc agctgcgaga aatcacgggc atccaggatc cttcctttct tcatgaagca
      241 ttaaaggcca gtaatggtga catcacccag gctgtcagcc ttctcacaga ccaaagagtt
      301 aaggagccca gtcacgacac agctgctaca gaaccatctg aagtagaaga gagtgctacc
      361 agcaaagatc tcttagcaaa agtgatagac cttacacatg acaacaaaga tgaccttcag
      421 gcagccattg ccttgagtct cctggagtct cctaacattc agactgacag cagagatctt
      481 aatagaatac atgaagctaa ctctgcagag actaaacgat caaagagaaa acgctgtgaa
      541 gtttggggag aaaaccacaa tcccaataac tggaggagag tggatggttg gccagttggg
      601 ctgaaaaatg ttggcaacac atgttggttc agtgctgtta ttcagtctct ctttcagttg
      661 cctgaatttc gaagacttgt tctcagttac agcctgccac agaacattct tgaaaattgt
      721 cgaagtcaca ctgaaaaaag aaatatcatg tttatgcaag agcttcagta tttatttgct
      781 ctgttattgg gatcaaatcg gaaatttgta gatccttctg ctgccctgga tctactgaag
      841 ggggccttcc gatcctcaga ggagcaacag caagatgtga gtgaattcac acacaagctc
      901 ctggattggc tggaggatgc gttccagcta gctgttaatg ttaacaatcc caggactaaa
      961 tctgaaaacc ccatggtgca gctgttctac ggtaccttcc tgacagaagg ggtccgagaa
     1021 ggaaaaccct tttgtaacaa cgagaccttc ggccagtacc ctcttcaggt aaacggttac
     1081 cacaacttag acgagtgttt ggaaggggcc atggtggaag gtgacattgc gctgcttcct
     1141 tctgatcgct cagtgaaata cggacaagag cgttggttta caaagctgcc tccagtgttg
     1201 accttcgaac tctccagatt tgagtttaat cagtctcttg ggcagcctga gaaaattcat
     1261 aataagctgg aatttcctca ggttatttat atggataggt acatgtacaa aagcaaagag
     1321 cttatccgaa gtaagagaga gagcattcga aagttgaagg aggaaataca agttctgcag
     1381 cagaaattag aaaggtatgt gaagtacggc tccggtccat ctcgcttccc actccccgac
     1441 atgttgaaat acgttattga atttgccagt acaaaacctg cctctgaaag ctgtctgtct
     1501 ggaagtgttg agcatatgac gttaccactt ccttctgtgc actgcccgat ttctgacctc
     1561 acagccaagg aaagttcaag tcccaaaagc tgctctcaga atgctgaggg ttccttttcc
     1621 tctccggaag atgctctacc caactctgag gtaatgaatg ggccatttac ttctcctcac
     1681 tcttccctgg aaatgcctgc acccccacca gctcctcgga cagtcacaga tgaggaaatg
     1741 aatttcgtta agacctgtct tcagaggtgg cggagtgaaa ttgaacagga tatacaagac
     1801 ttaaagaatt gtatctcgag caccacccag gctattgagc agatgtactg tgatcctctt
     1861 cttcgtcagg tgccttatcg cttacatgca gttcttgttc atgaaggaca agccagtgca
     1921 gggcactact gggcgtacat ctataaccag ccccggcaga tctggctcaa atacaacgac
     1981 atctctgtca ctgagtcttc ctgggaagaa cttgaaagag attcttacgg gggcctgaga
     2041 aatgtcagcg catactgctt gatgtatatc aatgacaagt tgccccactg cagtgcagag
     2101 gcagcgcatg gtgaatctga tcagactgca gaagtggaag ccctgtctgt ggaactcagg
     2161 cagtacattc aggaagataa ctggaggttt gagcaagagg tggaggaatg ggaggaagaa
     2221 cagtcctgta agatcccaca gatggagtcc tccccaaact cttcctcaca ggatttttcc
     2281 acatcacaag agtcttcagc agcgtcctcg catggcgttc gatgtttgtc ttctgaacat
     2341 gctgtgattg caaaggagca gactgcccag gccatcgcaa acacggctca tgcctatgag
     2401 aagagcgggg tagaagcagc cttgagtgag gcatttcatg aagagtactc caggctctat
     2461 cagcttgcca aagagacacc cacctctcac agtgatcctc gccttcagca tgttctcgtc
     2521 tactttttcc aaaatgaagc acccaagagg gtagtagaac gaacccttct ggaacagttt
     2581 gcagatagaa accttagcta tgatgagaga tctatcagta tcatgaaggt ggctcaggcc
     2641 aaactgatgg aaattggtcc agaggacatg aacatggaag agtataagag gtggcatgaa
     2701 gactatagtc tgttccgaaa ggtgtctgtg tacctgctaa cgggcctgga actcttccaa
     2761 aaaggaaagt accaggaagc tttgtcctac ctggtgtacg cgtaccagag caatgctggc
     2821 ctgctggtga aggggccccg caggggcgtg aaggagtctg tgattgcttt gtaccgcaga
     2881 aaatgccttc tggagttgaa tgccaaggct gcttctcttt ttgaaacaaa tgacgaccat
     2941 tctgtaacag agggcattaa tgtgatgaat gagctgatca ttccctgcat ccacctgatc
     3001 attaataatg acatttccaa ggacgacctt gatgccatcg aggtcatgag gaaccactgg
     3061 tgctcttacc tggggaagga catcgcagaa aatctgcagc tgtgtttagg ggagttccta
     3121 cccaggcttc tagatccttc cgcagaaatc atcgtcctaa aggagcctcc aactattcga
     3181 ccgaattctc cctatgatct ttgcagccgg tttgcagctg tcatggagtc cattcaagga
     3241 gtttcaacag taacagtgaa gtaaactgca catggacggt caagactcat tttggtctcc
     3301 agtcacctgc cagttacacg gcagtctgtt gttgcagact cccctggaga gagagattgg
     3361 gtgtctgagc aagatttaga ccctctgccc tctctgatat gtgtttaagg gattaaggat
     3421 aaagttgcgc atttaggtac agaatcatga gagctctctc actgaagaag gcaggagccc
     3481 ggtgcattaa ggttttgaat tatcccagaa gacctgaatt gcctttttaa atctcccata
     3541 ataattaccc ttcgggcgcc tgtctcatca gaactgagcc ggaggaacag tttctggttc
     3601 ttttgtcaag ttcaggtgac gtttctaagt ccttagctac cagagattgg caacaggggc
     3661 cttgcctggc tcttgacagt aacacaaagg gtgctgctga gcctttccct ccacacaagg
     3721 gtagagcgta aggcttcgcc caccatgaag ccacaggaaa gctgcctcca ttttcggtct
     3781 gtttatattt cagataaacc agaaaacctc acactcagtc ttgagtgaaa gagaagcaag
     3841 catcctgggc tctcacccca gtgctggtgt aaagctgcac aagggacatt taatagctaa
     3901 ttaagcaaca ttgtggagat tgtcacatgc aggtgtctaa ggctacctgg cctgatagaa
     3961 ttttgattct ctctttcctt tttttttttt tagaaataag ggatgtgaat ttatatagag
     4021 agagaccatc tatctgtgta tatgtagaga agctgctttt taaagaactt ttaattggga
     4081 attcatgttt taacaaaatt ttaaggatta acgaggaatc atgggaggga agaacacaac
     4141 tatgcagatt ttataaatgt gcaataaaag tatttgtttt accttt
//
