LOCUS       XM_039078351            4238 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 15
            (Usp15), transcript variant X5, mRNA.
ACCESSION   XM_039078351
VERSION     XM_039078351.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078351.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4238
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4238
                     /gene="Usp15"
                     /gene_synonym="Ubp109"
                     /note="ubiquitin specific peptidase 15; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 49 ESTs, 4 long SRA reads, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 59 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:171329"
                     /db_xref="RGD:628795"
     CDS             251..2449
                     /gene="Usp15"
                     /gene_synonym="Ubp109"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 15 isoform
                     X5"
                     /protein_id="XP_038934279.1"
                     /db_xref="GeneID:171329"
                     /db_xref="RGD:628795"
                     /translation="MPAYTKDSVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSN
                     LGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWS
                     GKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKD
                     ADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLP
                     LPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVPADKMIVTDI
                     YNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVVIPVCLREKFRHSSYTHH
                     TGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKMSTETEETDGPLRCCEDQNING
                     NGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEET
                     CKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDL
                     KKRYFDENAAEDFEKHESVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEH
                     QQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPC
                     RYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ
                     RQDTFSGTGFFPLDRETKGASAATGVPLESDEDSNDNDNDLENENCMHTN"
ORIGIN      
        1 gtggtagaac agggcatgtt tgtaaagcac tgcaaagtgg aagtctacct cacagaactg
       61 aagctctgcg agaatgggaa catgaacaat gttgtaactc ggagatttag caaagctgac
      121 acaatagaca caattgaaaa ggaaataaga aagatcttca atattccaga tgaaaaggag
      181 gccagactgt ggaacaagta tatgagtaac acatttgagc cactgaataa gccagacagc
      241 accatccagg atgccggcct ataccaagga cagtgtgaaa aactccaatt attgtctccc
      301 gtcatatact gcttacaaga actatgatta ttcggaacct ggaagaaaca atgaacagcc
      361 aggcctgtgt ggcctaagta acttgggaaa cacatgtttc atgaactcag ccattcagtg
      421 tttgagcaac acacctccac ttactgaata tttcctcaat gataagtacc aagaagagct
      481 gaattttgac aatcccttag gaatgagagg tgaaatagct aaatcatatg ctgaactcat
      541 caagcagatg tggtctggaa agtttagcta tgtcactcca agagcattta agacacaagt
      601 aggacgtttt gcacctcagt tctctggata tcaacagcaa gactgccaag aactactagc
      661 tttcctatta gatggattac atgaggattt gaatagaatt aggaaaaaac catatatcca
      721 gttaaaagat gctgatggga ggccagacaa ggtggttgct gaagaagcct gggaaaacca
      781 tttaaaaaga aatgattcta tcatagtaga tatatttcat ggccttttca agtctacgtt
      841 agtgtgtcct gagtgtgcta agatctcagt gaccttcgac cctttctgtt acttgacact
      901 tccattgcct atgaaaaagg aacgtagctt agaagtttat ttagttagaa tggatccact
      961 tgctaaacct atgcaataca aagtcattgt gcccaaaatt ggaaatatac tagacctttg
     1021 tacagcactg tctgctttgt cgggagtacc tgcagataag atgatagtca ctgacatata
     1081 taatcataga tttcacagga tatttgcaat ggatgagaac ctgagtagta ttatggagcg
     1141 ggatgatatt tatgtgtttg aaattaacat caacaggaca gaagacacag aacatgtggt
     1201 tattcctgtt tgcctaagag aaaagttcag acactcaagt tacactcacc acactggctc
     1261 ttcactgttc ggccagcctt ttcttatggc cgtgccacgg aacaatactg aagataaact
     1321 ctacaatctc ctgctcttga gaatgtgccg gtatgtcaag atgtctactg aaactgagga
     1381 aactgatgga cccctgcgtt gctgtgagga ccagaatatt aatgggaatg gtccaaatgg
     1441 catacatgaa gaaggctcac caagtgagat ggagacagat gaaccagatg atgagtccag
     1501 ccaggatcaa gagcttccct cagaaaatga gaacagtcag tctgaagatt cagtcggagg
     1561 agataacgat tctgaaaatg gattgtgtac tgaagaaaca tgcaaaggtc aactgacggg
     1621 acacaaaaag cgattgttta cattccagtt caacaactta ggcaacactg atatcaacta
     1681 tatcaaagac gacaccaggc atataagatt tgatgatagg cagcttcggc tagatgaaag
     1741 atcttttctc gccttggact gggaccctga cttgaagaag agatattttg atgagaatgc
     1801 tgcagaggat tttgaaaaac atgaaagcgt ggaatataaa cctccaaaaa gaccctttgt
     1861 gaagttaaaa gactgcattg aacttttcac aacaaaagag aagctaggtg ctgaagaccc
     1921 ctggtattgt ccaaattgta aagagcatca gcaagccacc aagaaattag atctgtggtc
     1981 cctgcctccc gttcttgtgg tgcatctcaa gagattctcc tatagtcgct acatgagaga
     2041 caagctagat acattagtcg attttcccat cagtgacttg gatatgtcgg aattcctaat
     2101 taacccaaat gcaggccctt gccgctataa tttgattgct gtttccaatc actatggagg
     2161 gatgggagga ggacattata ctgcttttgc aaagaacaaa gatgatggaa agtggtacta
     2221 ttttgatgac agtagcgtct ccactgcatc tgaagaccaa attgtgtcca aagcagcata
     2281 cgtgctcttc taccagagac aggacacttt cagtggaact ggcttcttcc ctctcgaccg
     2341 agaaactaaa ggtgcttcag ctgccacagg tgtccccctg gaaagtgacg aagacagcaa
     2401 tgataatgac aatgatctag aaaatgaaaa ctgtatgcac actaattaat gaaagtccaa
     2461 gaagccatac gagagagaga gaaagagaga gagagacttt cctgccggtg gtatctgtgg
     2521 agacggagtt acccaccgca ttaaacagag gtctgagagg aggcgtttca gatacccgaa
     2581 tgtaaatcct ttatcagatt ttaacttgtg cagtacttga agtgaaacac aatgaaaact
     2641 ttaacagaaa ttgtctctta atacatttac agtcttgtat ttacaagcta aatatatata
     2701 ggaaatcaca aataaatccc ttttaagttt gctgctgttt tgatcaatta tgttttcttt
     2761 aatttttgga tgtgacttaa ttgatgacaa atgttaactt tgtggatgtt ggtcattaat
     2821 tttgctctaa taatactgca aggaaactct ggctgaactt ggttcttggg taatctagtc
     2881 ctgtgcgcta ggctggctgt ctgcacctct cgggtactta gctgctgtca gtgtggccca
     2941 gacactgcag tgcccttggt acaccagatc tcccagtctg tctgtccctg gtaatcagtg
     3001 tgggtctgtt accacaaccc gaggagcagc cttgaggaag ttcccttttg ttgtatcatt
     3061 aaagtgcaga acattacgtt tatctcgctc actgtgggaa cacgttctag atttcacatg
     3121 ccatcaaaat cattttcagc tacatgtaag tatctttcac tgcaattgga atctataaat
     3181 ttttcaattt tgttttggtt taaaatgctt atcttcaatt cactgttggt taaaatgaaa
     3241 ggtttcatgt tttgctgtct attattctcc actccatttt ggtaatttgg caacttttta
     3301 gctctcccag ttactatagc tttaaggcag gctggttagt actctgtatc tgtactaaga
     3361 attgcatcaa agttaggcga ggttttctgt tcatgtacta gcctttaact cattgctaat
     3421 ttggctctag aggtaggtct gttaactttc tctgtgtatt cctgatggaa ttcaccatag
     3481 ccttacagct tctctcagaa ggtaacttgt ataagagaaa tagcatttgc atgttcgttc
     3541 cacagtcaga acctgtgcag cacatgacgc atacaaacct tgggtttcat ttagcttctc
     3601 acagtcaagg atccaagacg ccaaatatat atgtgagcat ttgatacatt ttcatttgct
     3661 gcttttctct ccctctgatc cagttgaaag aatgtatgga tgattggcag gcaatactgc
     3721 ctttaatagg aaactaaatg ctggggcaca tttcacatcc gactacctga gaaatcgctt
     3781 tgtgtcccac tgttattaaa gcaaaaatta taatgttctt cacttgaact aatcaaatac
     3841 aatagattat aaattgtgta ttgtaaataa aagttcactc tgtgagtgca cattttggta
     3901 aattatttat ttatgttagc attttaaaag aaagggaaaa aagtgcattt gaccaggata
     3961 agtaaggtat gttgatcatg gctttgcttt atatcttgat attaaagctg gtttttcatc
     4021 ctggtctttt aaaagctgct tcgggtgttg tttctttttt cttttctttt ctcttttttt
     4081 cttcttttta tctctctctc tttttttttt ttaaatgtaa acacaacctc ctgcatgaca
     4141 gaggttaata ttttgtctgc acttgggttc acttgagttt acatttgaaa tgtgcatgtt
     4201 tatttataca gatttcaata aagctattga cagcctta
//
