LOCUS       XM_006254398            4042 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 14
            (Usp14), transcript variant X2, mRNA.
ACCESSION   XM_006254398
VERSION     XM_006254398.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006254398.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006254398.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4042
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4042
                     /gene="Usp14"
                     /note="ubiquitin specific peptidase 14; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 76 ESTs, 7 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 242 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:291796"
                     /db_xref="RGD:1311825"
     CDS             344..1720
                     /gene="Usp14"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 14 isoform
                     X2"
                     /protein_id="XP_006254460.1"
                     /db_xref="GeneID:291796"
                     /db_xref="RGD:1311825"
                     /translation="MPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQ
                     KVMVKGGTLKDDDWGNIKMKNMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYA
                     GALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQY
                     LQQDANECWIQMMRVLQQKLEAIEDDSARETESSSASAVTPSKKKSLIDQFFGVEFET
                     TMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALY
                     IKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDVYELCTPELQEKMIS
                     FRSKFKDLEDKKVNQQPNANDKNSPPKEIKYEPFSFADDIGSNNCGYYDLQAVLTHQG
                     RSSSSGHYVSWVKRKEDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVE
                     IMEEDSEQ"
ORIGIN      
        1 cccttacaac ttcagccctc ccactcacgt ccaggctcca cctccacttt ggcccgcctg
       61 gccagcctct ccctttttcc ccctacctcc aggccccgcc tctgccccgt gctgcactcc
      121 ccgcacttcc tcgcctcccc cctgccccca accgcggtgg cttcctgggc gaacagcgtg
      181 ctgctgcgtc atcgccagtg gccggtttga atgaggcttg tcgcaccgga gctgccgcta
      241 ccactgcgct tcctctccgg ccggctccgc aagctgcttc atatacctcg gctgcccttg
      301 tcaggcccag cctcccgcgc cgtttcttcc ctcctgcctc gccatgccac tctactctgt
      361 tacagtaaaa tggggaaagg agaaatttga aggtgtagaa ttgaatactg atgaacctcc
      421 aatggtgttc aaggcccagc tttttgcatt gactggagtc cagccagcca gacaaaaagt
      481 tatggtgaaa ggaggaaccc tgaaggatga tgactgggga aacatcaaaa tgaaaaatat
      541 ggagttgccg tgtggattga caaacctcgg taacacttgt tacatgaacg ctacagttca
      601 gtgtattcgc tctgtgcctg aactcaaaga cgcccttaaa aggtatgcag gtgccttgag
      661 agcttcaggg gaaatggctt cagcacagta tattactgca gctcttagag atttgtttga
      721 ttccatggat aaaacttctt ctagtatccc acctattatt ctgctgcagt ttctgcacat
      781 ggcttttcca cagtttgcag agaagggcga acaagggcag tatcttcagc aggatgctaa
      841 cgagtgctgg atacaaatga tgagagtcct gcaacagaaa ctagaagcca tagaggatga
      901 ttctgctaga gagaccgagt cttcatctgc atcagcagtc acaccttcta aaaagaaaag
      961 cttaattgat cagttttttg gtgttgagtt tgaaactacc atgaaatgta cagaatctga
     1021 agaagaagag gtcaccaaag gaaaggaaaa tcaacttcaa cttagttgtt tcattaacca
     1081 ggaagtgaag tatcttttca cagggcttaa attgcgactt caggaagaaa ttactaaaca
     1141 gtctccaaca ttgcagagaa atgctttgta catcaaatct tctaagatca gccggctacc
     1201 tgcttactta actattcaga tggttcgatt tttttataaa gagaaagaat ctgtgaacgc
     1261 caaagttctt aaggatgtta aatttcctct catgttggat gtgtatgaac tctgtacacc
     1321 ggaacttcaa gagaaaatga tctcttttcg gtcaaaattc aaggatctag aagataaaaa
     1381 agtgaatcag caaccaaatg caaacgacaa gaatagtcct ccaaaagaga ttaagtatga
     1441 acccttttca tttgctgatg atattggctc caataattgt ggctactatg acttacaagc
     1501 agtgttaact caccagggaa gatctagttc ttcgggtcat tatgtatcat gggtgaaaag
     1561 aaaagaagat gaatggatca aatttgatga cgataaggtc agcattgtaa caccagaaga
     1621 tattctgcga ctgtctggag gtggagactg gcacattgct tatgttctac tttatgggcc
     1681 tcgaagggtt gaaataatgg aagaagacag tgaacagtaa ccttcaattt agctatttat
     1741 gcctaggtgt gatataaatg tgtgtatgtg gtggtttttt ttttttgttt tgaatatttc
     1801 tataatcttg agctctaaag agaatgagaa cagaaccaag ccacttgtgt atcatcaatc
     1861 ttaagactac agataattac gtttgggtgc tacctaatgt aaaggtagct acaagacatt
     1921 ctttaaaatc ttttgcatta attgttacaa attcttggct gaaatccatt ttatcccttg
     1981 cctattcaac ccaagattta gcaatgatgt ttattgcaca cctatgtgtt gttcttgcat
     2041 ggttaatatc accgttcagt agctgcccgt cctttgcctt atctaaccaa tattttccta
     2101 ggaggtggaa aatgaagtgt tgctctcatc gtgtaactca gtgctgctgt ccacatccca
     2161 tcaactgggt gcaatcaagt attgtccaga ctgactgttg ctggcctttc atgactttac
     2221 aataaattgt gattaatacg aacacacttg attatacact tattattgtg tctctaatgt
     2281 gctgtggttt atgtgtaact ttgcattggt ctttgtggta atcatatgta taaacaagct
     2341 ctggttgctt atttttagaa accaaggata tttaataatt aaaaataagg aaaaagaggg
     2401 attaacaact tttgacctgg tctcttttta gtattagagc ttggctgaag agtcagatga
     2461 attcaatact atacagtttc tgcaaatagc taataatcta agcagttaaa catccattta
     2521 aaatacaaga aactttaggt tggccagtgt tatttcaaaa gaaacacaaa gttgtaaaag
     2581 tgatgaattc ctttggacac tgaattctgt gatcagtttc attacctcac atacctgttg
     2641 tttatgtttc aggaacctta atttccttag caatctaagg aaaggaccaa atgttgaata
     2701 ttgtagcaag ttggtcgatt tgagttgatt aataataaaa ttttgggaat attatgacat
     2761 tttggactat atgttctaat gctctgtaaa gtacccaaga tttttattag ataataactc
     2821 tgtaacactg tgggtaagcc agcatttcag gtttgtaaag tttgctaact tacatggaat
     2881 gtgtactgta atggttttac tcagtctcat tggctagttg gagaaggaag taacttggca
     2941 cctgtgtttt cccactaaac caggtgaggt gggtttacaa caaatacacc aaaaccatgt
     3001 ttagagtgca ctgagaatta aaaactatta tacaaaaagc ttctcgatag tttatttgac
     3061 ctagaaaagc attccaaaga gaattcttta aagtagaaat tggatttcca gtgttgtttt
     3121 aaataaggtg tttagtattt tagaatgcat ccttgaatgt aagagagaag aggcaaaaaa
     3181 tccattctcc ctttcagttc ctgagcatgc cttaatttgc ttagtgcaga gggtaccagg
     3241 aagctggagc tgtgcgcagc cactgcttcc ccagctagtg gagtgtgcat ggtccaggca
     3301 aggacacttt taaccttcac cagacaccaa acacccacag gaaatgttgt atgggaacag
     3361 aacatgaacc ttcagccagc accgcacatg ctctgctaca tacagtgtat tttcacaagt
     3421 caactgacag gaatccctgg gtgtttagag acttgaggat gtcaagtaat ctttataaag
     3481 ctaaaggagt agttgggtct tagactccac ttcacataaa gttagaggct agcaaacatt
     3541 ttctgtattg gccaaacagc aaatggtttg cagggcccct ggctatcagt ctggactctt
     3601 gctgtagtag agtaaacatg gcagactgcc agtaaaacac ttaaactatc catcctttgc
     3661 caatcctctg ctttccagct ttccagtcct aaggtttcag aagtgtcatc ttgtgatttc
     3721 agaatacatt ttataactga tagcatgcag gaaactaatt tgggacagga ctctaacata
     3781 ctcataaata gtactcattt aacttcatta taaaaatact tacaaaaagt cgtctgtgat
     3841 cttgtggtcc ttttactttg gccattttcc caccctgtcc tcctatactc caatgcctgt
     3901 tcggtatgtg gttttttgag caccagctaa ctgtacaaca gctgttataa aagtgtttat
     3961 tgtttaccaa aaccagtgaa ccttttatca aatgctgctt ggtaacaaaa tcttaatcac
     4021 tgttcaataa aaaaggagag aa
//
