LOCUS       NM_001033687            2483 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus USH1 protein network component harmonin binding
            protein 1 (Ushbp1), mRNA.
ACCESSION   NM_001033687 XM_214324
VERSION     NM_001033687.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2483)
  AUTHORS   Ishikawa,S., Kobayashi,I., Hamada,J., Tada,M., Hirai,A.,
            Furuuchi,K., Takahashi,Y., Ba,Y. and Moriuchi,T.
  TITLE     Interaction of MCC2, a novel homologue of MCC tumor suppressor,
            with PDZ-domain Protein AIE-75
  JOURNAL   Gene 267 (1), 101-110 (2001)
   PUBMED   11311560
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC101905.1.
            
            On Sep 25, 2005 this sequence version replaced XM_214324.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC101905.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..2483
                     /gene="Ushbp1"
                     /note="USH1 protein network component harmonin binding
                     protein 1"
                     /db_xref="GeneID:290629"
                     /db_xref="RGD:1310859"
     exon            1..91
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            92..217
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             164..2206
                     /gene="Ushbp1"
                     /note="USH1C-binding protein 1; Usher syndrome 1C binding
                     protein 1; usher syndrome type-1C protein-binding protein
                     1"
                     /codon_start=1
                     /product="harmonin-binding protein USHBP1"
                     /protein_id="NP_001028859.1"
                     /db_xref="GeneID:290629"
                     /db_xref="RGD:1310859"
                     /translation="MSARATRPRSRRGRHPLPGELDPVAESSEEVDTTNGSFETKPEL
                     LQEHLGPSLQGPGNRIKEDCDVGSHGVLPLSPEERREPEVEAHQALQEAPLDTGPAEI
                     TAPNVYETLKCRLSSLEAVVAAWRRHSLSFSKPVEAEDRDPGAPGSFGNEEEASGPGQ
                     QEAAHFIERNAWLRLALGTREEELARTQASLQDAQAENETLQRQVQELEDSLMQLEAS
                     PPPSMLRAGRRNSNSSSSGAERRPWAPQDSPMAHPFLQRLRSDSSTQSFGCLSTQRPS
                     PEMYLMEDQMGQLQGNIEKLKCFNRLLLAVLQGYKGRCESLSIKLGKREAEATALHLA
                     LQYSKDCEEVYEVLLALKTAGLGAGVGATNGDLQAAEKEASRLLVKKEVAMDVKTPQP
                     SPEGSSVDKPTPEELAAQLHGYVQHLRERWALLKIPPVLDPATAPKPTMPHAEATVQT
                     ILEIQPGPTLPQLEKSQIQQDLAATRDGLADLVLRLQLAQREKRGLELREAALRAQGP
                     ALRLLLQQLRWEQAHLMGDGSSGGSSEDPSSEEEAGEDRQQHYQGPPALLGGQMGKVW
                     DSETVSQELSASLTRAVDLRAQLQSLRRQLEQMAQKGRTRGAQSAELNRELCKAHSAL
                     ALAFREAHRKQEEQCRKLEQQMARMQAQQAEELAVLTATARALGDPGAPQPVQTFL"
     exon            218..339
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            340..775
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            776..901
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            902..1035
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1036..1176
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1177..1341
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1342..1591
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1592..1819
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1820..1905
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1906..2028
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            2029..2471
                     /gene="Ushbp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccagaatggc ctgagatatt cttaggagtt cagacctttc ccaaggtgcc ctggagaaga
       61 agagaagagg gccgcagggc caatccccag ggaaaaaaca aaaaacaagg ataccaaggt
      121 aacaaaaggc aagaactgag agcaggctgt agtgacaaga gtaatgagtg cccgggccac
      181 acgaccccga agccggcgag ggaggcatcc tctgcctggg gagctggacc cagtagctga
      241 gagctcagag gaggtagata ccaccaatgg gagcttcgag actaaacctg agctgcttca
      301 ggaacatctt ggtcctagcc tgcagggccc tgggaaccgg atcaaggagg attgtgatgt
      361 gggatcccat ggggtcctac ccttgagccc ggaagaacgg cgcgagcctg aggtggaagc
      421 ccaccaggcc ctgcaagaag cccctctgga tactggccct gctgagataa cagcacccaa
      481 tgtgtatgag accttgaagt gcaggctgag ctccctggag gcagttgtag ctgcctggcg
      541 ccgccactcg ctaagctttt caaagccagt ggaggcagaa gacagagacc cgggagctcc
      601 ggggtctttt ggtaatgagg aagaagcctc tggacctgga cagcaggagg cagcgcactt
      661 catagagagg aacgcctggc tccggctggc cctgggcacc cgggaggagg aactggcgcg
      721 gactcaggct tcactgcagg acgcccaggc agagaatgag actctgcaga gacaggtaca
      781 ggagctggag gattccctga tgcagctgga ggcctccccg cctccctcca tgctcagagc
      841 aggccgtaga aacagcaact ccagcagttc tggggcagaa aggagaccct gggcacctca
      901 ggactccccc atggctcacc cctttctcca acgccttcgg agtgactcca gcacccagag
      961 ctttgggtgc ctttccacac agcgtccatc cccagagatg tacctcatgg aagaccagat
     1021 gggacagctc caggggaaca ttgagaagtt gaagtgcttc aaccgcctcc tgctggctgt
     1081 gctccagggc tacaagggcc gctgtgagag cctcagcatt aagctgggca agagagaggc
     1141 tgaggccaca gccctgcacc tggctctaca atatagcaag gactgtgagg aggtgtatga
     1201 ggtgctgctt gctctgaaga cagctggtct aggagctgga gttggagcta ccaatggcga
     1261 cctgcaggct gctgagaagg aggcctctag gctgctggtg aagaaggaag tagccatgga
     1321 tgtaaagaca ccccagccca gtccagaggg cagtagtgtg gacaagccta caccagagga
     1381 actggctgct cagctccacg gctatgtcca gcatctccga gaacgctggg ctctgctgaa
     1441 gatcccccca gtacttgatc ctgccactgc acccaagccc actatgcccc atgcagaagc
     1501 aacagtgcag accattctgg agatacagcc cgggcccacc ttgcctcagc tggagaagtc
     1561 tcagatccag caggacctag cggctactcg ggacggtctg gctgacctgg tgctgcggct
     1621 gcagctagca cagcgagaga agcgcgggct ggagcttcgg gaggcggctc tgcgggccca
     1681 gggccctgct ctccgactgc tcctgcagca gcttcgctgg gagcaggctc atctcatggg
     1741 cgatggcagc agcggaggca gcagcgagga cccgagcagc gaggaggagg ctggggagga
     1801 cagacagcag cactaccagg gtcctcctgc tctcctgggt ggtcagatgg gcaaagtgtg
     1861 ggactctgag accgtatccc aggaactgtc agcatctctg acccgggcag tggacctgcg
     1921 ggcgcagctg cagtccctgc ggcggcagct ggaacagatg gctcagaagg gccgaaccag
     1981 aggagctcag agtgctgagc tgaacagaga gctgtgcaag gctcacagcg ctctggcttt
     2041 ggccttcaga gaagcccacc ggaagcagga agagcaatgc cggaagttgg agcagcagat
     2101 ggctcggatg caggctcagc aggcagagga gttggcagtg ctgacagcta ccgccagggc
     2161 cctgggggat cctggggcac cccagccagt ccagaccttc ctgtagggcc gggaccaagc
     2221 ttgcatgtga cccacggggt ggtggaagtg tcacaatgtt ctgtggtgga cagggaggca
     2281 gagggcccag cgactaagag cagggtctgc tcttgcgggg acatgggttt aattgctagc
     2341 tagcctcagc agccatggcg cctgtgactc caagtcaagg agatctgtcg cccccttctg
     2401 gcctctgcag gctctgcatt aatattcaca caccctcctc acaaatgtaa ttaaacgaaa
     2461 taacatacaa aaaaaaaaaa aaa
//
