LOCUS       XP_038944824            2222 aa            linear   ROD 11-JUN-2023
DEFINITION  basic helix-loop-helix domain-containing protein USF3 [Rattus
            norvegicus].
ACCESSION   XP_038944824
VERSION     XP_038944824.1
DBLINK      BioProject: PRJNA677964
DBSOURCE    REFSEQ: accession XM_039088896.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     Protein         1..2222
                     /product="basic helix-loop-helix domain-containing protein
                     USF3"
                     /calculated_mol_wt=237248
     Region          15..79
                     /region_name="bHLHzip_USF3"
                     /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain
                     found in basic helix-loop-helix domain-containing protein
                     USF3 and similar proteins; cd18910"
                     /db_xref="CDD:381480"
     Site            order(23..24,26..27,30..31,35,54..55)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381480"
     Site            order(33..34,37..38,40,44,55,59..60,63,65..67,69..70,
                     72..73)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381480"
     Region          <311..644
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2222
                     /gene="Usf3"
                     /coded_by="XM_039088896.1:423..7091"
                     /db_xref="GeneID:303946"
                     /db_xref="RGD:1560175"
ORIGIN      
        1 mpemtehetp tkkqhrkknr ethnaverhr kkkinaginr igelipcspa lkqsknmild
       61 qafkyitelk rqndelllng gsseqaeeik klrkqleeiq kengryiell kandiclydd
      121 ptihwkgnlk tskvsvvips dqvqkniivy sngsqpggns qgtavqgitf nvghglqkqt
      181 anvvpvqrtc klvtpvsisg iypsenkpwh qttvsalaan qsvplclpta isaqnilels
      241 tsesqssalg atggsvvtts vgpdphqhrs lntclndqna sensnvqesp ksskktvssv
      301 sgtsssnsaa apgvhhetks slatqgssad sqntlvsitt pvssqpprst gssspvsvsk
      361 tvdptntaaa vvpahtavsk salpvsslsa tpleggwtls cslpsssvsa selkninslt
      421 rissagntqt twttlhlagn tiqplsqpps sastpalnec gtsptpsnhk hmatgitfnn
      481 spptdgqpve qivvtlpscp plpmqpliaq pqvksqppkn ilplnsamqv iqmaqpvgsg
      541 vtaapanqnv iilqppsttp cpammraevs nqavgqqivi iqaanqnplp llsaphpgpv
      601 rlpvngasai igshnsvqnv papqtfggkh lvhilprpss lstsnsaqtf svtmsnqqqp
      661 qtislngqlf alqpvmsssg ttnqspmqii qpttsedpnt nvalntfgal aslnqsisqm
      721 agqscvqlsi sqsanpqtsa nsqtsptncv slttvaptmt aensatqstt yslatasstn
      781 tvtclpstmk skrlskkpsa kkhlaankpa cplnsvrdvg kmdgpgmdss aepscsdgll
      841 nglpvglssv tvsqaksvsi sashsldiln sesvipesds ksksaedcss ssreseaneq
      901 lalatakskd stpilqessq gtppcsvalp natkscasan vltpsptese slvsqvsgmp
      961 sttstsntvc iseveivaep cpvqqesldt mqaagplkgq gltmllsdla kekdlqrtsl
     1021 pvqmdhpdfs pesskigdpn vdlhpkqell ltsddrdlpq phsclpdqev ihgslltsrq
     1081 adspmstssg ssrsfsvasm lpetaredvt ssttntcdsc tfaeqtdiva laaraildqe
     1141 siekgrlgtq adlkdvtpkp setslegdqp fkpqihketc tgqadptpne fnsqdsvevt
     1201 vdrplekpsc slgikasnpp lqvsasqpps lthqnsisrp lvscaglsqs sdqtaipvtv
     1261 nmtvassayg sqppvpplmt eysqeqlnsm ansipnpqvq eplskpshes rkdsakrtvq
     1321 ddlllssakr qkhcqpaplr lesvplmsrt pdnipdqtqm masqitpnss nsvvpvsnpa
     1381 hgdgltrlfp agnnfaapvl rqadvqcnpq psvaeqpqqt qagqhlqalq qhvppqgvsh
     1441 lhtnhlylkq qqqqqqagql rerhhlyqlq hhvphadnav hsqphivhqq rtlqqevqmq
     1501 kkrnlvqgtp tsqlslqpkh hgtdqsrpks sqphphhqqm qqqlqqhfas sqpekscenp
     1561 sssrghhshp qnhlnqdvlh qqqdvgsrqq gsavssdhvs ghnpmqrllp srgleqqmvs
     1621 qpsivtrssd mtcaphrper nrvssysaea ligkssstse qrlgisiqgs rvsdqlemrs
     1681 yldvprnksl alhnmqgrmd htvtsdirls dcqtfkpgaa sqqpqsnfev qssrnneign
     1741 papslrgmqs qafrisqntg pppidrqkrl syppvqsipt gnavpprdse ntchqsfmqs
     1801 llaphlgdqv igsqrslseh prntqcgpss tieyncppar esvhirrese sqnrescdms
     1861 lgainprnst lnipfsssss sgdiqgrnts pnvsvqksnp mritdshgak ghmnppvtsn
     1921 mhgvarptlp hpsvshgnad qgppvrqans svaqrsrhpl qdssgskirq pernrsgnqr
     1981 hsnvfdpslp hlplstsgsm ilgrqqpaae krgsivrfmp dspqvpndns gpdqhslsqn
     2041 fgfpfipegg mnppinants fipqvtqpsa trapalipvd pqntlpsfyp pyspahptls
     2101 ndisipyfsn qmfsnpstek vnsgslnnrf gsilspprpv gfaqpsfpll pemppmhman
     2161 shlsnfnmts lfpeiaalpd gsamspllti anssasdssk qssnrpahni shilghdcss
     2221 av
//
