LOCUS       NM_001169100             863 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus unconventional SNARE in the ER 1 (Use1), mRNA.
ACCESSION   NM_001169100 XM_001065114 XM_214304
VERSION     NM_001169100.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Uemura,T., Sato,T., Aoki,T., Yamamoto,A., Okada,T., Hirai,R.,
            Harada,R., Mori,K., Tagaya,M. and Harada,A.
  TITLE     p31 deficiency influences endoplasmic reticulum tubular morphology
            and cell survival
  JOURNAL   Mol Cell Biol 29 (7), 1869-1881 (2009)
   PUBMED   19188447
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Verrier,S.E., Willmann,M., Wenzel,D., Winter,U., von Mollard,G.F.
            and Soling,H.D.
  TITLE     Members of a mammalian SNARE complex interact in the endoplasmic
            reticulum in vivo and are found in COPI vesicles
  JOURNAL   Eur J Cell Biol 87 (11), 863-878 (2008)
   PUBMED   18834646
REFERENCE   3  (bases 1 to 863)
  AUTHORS   Hirose,H., Arasaki,K., Dohmae,N., Takio,K., Hatsuzawa,K.,
            Nagahama,M., Tani,K., Yamamoto,A., Tohyama,M. and Tagaya,M.
  TITLE     Implication of ZW10 in membrane trafficking between the endoplasmic
            reticulum and Golgi
  JOURNAL   EMBO J 23 (6), 1267-1278 (2004)
   PUBMED   15029241
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1 and BC158812.1.
            
            On or before Dec 16, 2009 this sequence version replaced
            XM_001065114.1, XM_214304.4.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ217580.1, BC158812.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-24                JAXUCZ010000016.1  18073164-18073187
            25-863              BC158812.1         1-839
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..863
                     /gene="Use1"
                     /gene_synonym="RGD1306660"
                     /note="unconventional SNARE in the ER 1"
                     /db_xref="GeneID:290627"
                     /db_xref="RGD:1306660"
     exon            1..143
                     /gene="Use1"
                     /gene_synonym="RGD1306660"
                     /inference="alignment:Splign:2.1.0"
     CDS             9..821
                     /gene="Use1"
                     /gene_synonym="RGD1306660"
                     /note="unconventional SNARE in the ER 1 homolog"
                     /codon_start=1
                     /product="vesicle transport protein USE1"
                     /protein_id="NP_001162571.1"
                     /db_xref="GeneID:290627"
                     /db_xref="RGD:1306660"
                     /translation="MAQAEGACHRPLATSRLELNLVRLLCRCESMAAEKREPDEWRLE
                     KYVGALEDMLQALKVQASKPASEVISEYSRKVDFLKGMLQAEKLTSSSEKALANQFLA
                     PGRVPTTAKERVPATKTVHLQSRARYTSEMRSELLGTESSGELEADMRKRVVKGPRPA
                     DEKQSASELDLVLQRHQGLQEKLAEEMLGLARSLKTNTLAAQSVIKKDNQTLSHSLKM
                     ADQNLEKLKLESERLEQHAQKSVNWLLWAMLIVVCFVFISMILFIRIMPRLK"
     exon            144..193
                     /gene="Use1"
                     /gene_synonym="RGD1306660"
                     /inference="alignment:Splign:2.1.0"
     exon            194..272
                     /gene="Use1"
                     /gene_synonym="RGD1306660"
                     /inference="alignment:Splign:2.1.0"
     exon            273..425
                     /gene="Use1"
                     /gene_synonym="RGD1306660"
                     /inference="alignment:Splign:2.1.0"
     exon            426..438
                     /gene="Use1"
                     /gene_synonym="RGD1306660"
                     /inference="alignment:Splign:2.1.0"
     exon            439..466
                     /gene="Use1"
                     /gene_synonym="RGD1306660"
                     /inference="alignment:Splign:2.1.0"
     exon            467..638
                     /gene="Use1"
                     /gene_synonym="RGD1306660"
                     /inference="alignment:Splign:2.1.0"
     exon            639..840
                     /gene="Use1"
                     /gene_synonym="RGD1306660"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttctaagat ggcgcaggcg gaaggggcct gtcaccgtcc gctggcgacg tcgcggctgg
       61 agttgaacct ggtgcggctg ctttgtcgct gtgagtcgat ggcggccgaa aaacgagaac
      121 cggacgagtg gcgtctggag aagtatgtgg gtgccctgga agacatgctg caggccctga
      181 aagtccaagc aagtaaaccg gcctcggaag tgatcagtga gtactcccgc aaagtggact
      241 ttctgaaggg catgctgcag gctgagaagt tgacctcctc ctctgaaaag gctctagcta
      301 accagttcct ggctcctggc cgcgtgccca ccacagccaa ggagcgggtg cctgccacca
      361 agactgtaca tttgcagtct agagcacgtt acaccagtga gatgcggagt gagctgttgg
      421 gcacggagtc ctctggagag ctggaggcag acatgaggaa gcgagttgtg aaggggccta
      481 gacctgcaga tgagaagcag tcagcgtccg agctagacct cgtcctccag aggcaccagg
      541 gcctccagga aaagctggct gaggagatgc taggcttggc ccgcagcctg aagaccaaca
      601 cactggctgc ccagagtgtc atcaagaagg acaaccagac cctgtcacat tcgctcaaga
      661 tggcagacca gaacctggag aagctgaagc tggagtcaga gcggctggag cagcacgcac
      721 agaagtcggt gaactggctg ctgtgggcca tgctcatcgt cgtgtgcttc gtgttcatca
      781 gcatgatcct gttcatacgc atcatgccca gactgaaata aaacaacacc cgcccgccaa
      841 aaaaaaaaaa aaaaaaaaaa aaa
//
