LOCUS       NM_001137562            1245 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ubiquitin related modifier 1 (Urm1), mRNA.
ACCESSION   NM_001137562 XM_001076272 XM_231116
VERSION     NM_001137562.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1245)
  AUTHORS   Schlieker,C.D., Van der Veen,A.G., Damon,J.R., Spooner,E. and
            Ploegh,H.L.
  TITLE     A functional proteomics approach links the ubiquitin-related
            modifier Urm1 to a tRNA modification pathway
  JOURNAL   Proc Natl Acad Sci U S A 105 (47), 18255-18260 (2008)
   PUBMED   19017811
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB313752.1, BC169094.1 and BP465324.1.
            
            On Nov 24, 2010 this sequence version replaced NM_001137562.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169094.1, DN935524.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-10                CB313752.1         4-13
            11-979              BC169094.1         1-969
            980-1245            BP465324.1         3-268               c
FEATURES             Location/Qualifiers
     source          1..1245
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..1245
                     /gene="Urm1"
                     /gene_synonym="RGD1306599"
                     /note="ubiquitin related modifier 1"
                     /db_xref="GeneID:311840"
                     /db_xref="RGD:1306599"
     exon            1..55
                     /gene="Urm1"
                     /gene_synonym="RGD1306599"
                     /inference="alignment:Splign:2.1.0"
     CDS             21..326
                     /gene="Urm1"
                     /gene_synonym="RGD1306599"
                     /note="ubiquitin-related modifier 1 homolog"
                     /codon_start=1
                     /product="ubiquitin-related modifier 1"
                     /protein_id="NP_001131034.2"
                     /db_xref="GeneID:311840"
                     /db_xref="RGD:1306599"
                     /translation="MAAPLCVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRNLLVW
                     IKTNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLHGG"
     exon            56..126
                     /gene="Urm1"
                     /gene_synonym="RGD1306599"
                     /inference="alignment:Splign:2.1.0"
     exon            127..208
                     /gene="Urm1"
                     /gene_synonym="RGD1306599"
                     /inference="alignment:Splign:2.1.0"
     exon            209..257
                     /gene="Urm1"
                     /gene_synonym="RGD1306599"
                     /inference="alignment:Splign:2.1.0"
     exon            258..1245
                     /gene="Urm1"
                     /gene_synonym="RGD1306599"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctagtttgg cttcctcaac atggcggcgc ccttatgtgt ggaggtggag ttcggaggtg
       61 gtgcggagct cctgtttgat ggggtaaaaa agcatcaagt caccttgcct gggcaggagg
      121 aaccctggga tatccggaac ctccttgtct ggatcaagac gaatttgcta aaagagcggc
      181 cagagctatt catccaggga gacagtgtgc ggcctggaat cctggtcctg attaatgatg
      241 ccgactggga actgctggga gagctggact accagctgca ggaccaggat agcatcctct
      301 tcatctccac cctgcatggc ggctgaggcc tcctcgatta gcccaagcac ctttgcaagg
      361 ggaacacagg acaaccacag acccctcgga tgcttccagg tcctccgtcc cccttggctg
      421 cctccttccc tgctgtaccc ctgagcttcc tgtatgcagg gaaaagaggc caggtgctaa
      481 aaatgagcct ttctgggcaa ggcggcacgt gagcagggag agagagcagg gagggagagc
      541 agccgcctga gcccagcact ccttccagca gctgaggtgg gggagggtgc tcctgtgctg
      601 tgtcaggagt ggaggggctc tgtgcccagg tgacccagct gcttgctgct acgtcttggt
      661 gtatgtatgc tcttagtggt ggcctggaag gcactccagt tcccgagaca tcttcatggg
      721 gaagatggat ggactgtagt aactgatgag aggctcctcc cttgccaaag attagagggg
      781 cctccgcctc agtttcccca tctggacaca gagagctctg cttgtccccc actgatgtca
      841 ttatggaacc ccagctgggg tcccctattc agtgctcacc tccctcccct ccactcagca
      901 gctgctctcc tagctatacc cctcctcccg ttcccccatc cccagccctt gaccctggct
      961 ggcctccccc cccccccccc ccacataggc caccagatgg gctcctgaga cactctccag
     1021 gctgcctaca actcattctg ttgggggtag aaaatggaag gaagtagcct aactttaggc
     1081 agaggggggc gggcctcagc atgtgtaact ccaggcttcc tgaaacaagc aggatttggg
     1141 tgtcccccct ttcctccatc ccttctggaa ctctggagac ttcatgcctg caacagctgg
     1201 ccttgggcaa ataaagagac taggttgttt actagccttg cctca
//
