LOCUS       NM_001109020             975 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus uroplakin 3B like 1 (Upk3bl1), mRNA.
ACCESSION   NM_001109020 XM_001077158 XM_347159
VERSION     NM_001109020.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 975)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CH473973.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_347159.3, XM_001077158.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5756307, SAMEA5760383
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..975
                     /gene="Upk3bl1"
                     /gene_synonym="Upk3bl"
                     /note="uroplakin 3B like 1"
                     /db_xref="GeneID:367994"
                     /db_xref="RGD:1598237"
     exon            1..155
                     /gene="Upk3bl1"
                     /gene_synonym="Upk3bl"
                     /inference="alignment:Splign:2.1.0"
     CDS             74..826
                     /gene="Upk3bl1"
                     /gene_synonym="Upk3bl"
                     /note="uroplakin 3B-like"
                     /codon_start=1
                     /product="uroplakin 3B like 1 precursor"
                     /protein_id="NP_001102490.1"
                     /db_xref="GeneID:367994"
                     /db_xref="RGD:1598237"
                     /translation="MGPHRKQSMLLLPLLVLVTCVQPGTGLESINYVPQLPSATLEGR
                     LTQSTFTLEQPLDQFKNVNLSDADPIWLVVARSDTAQNFTAPRKVEDRHAPAHFDDNG
                     YYLTLRASRVHYKGSQNDSRLPVLRVGNDNNCSVRSQGCNSPLPGPGPYRVKFLAMNA
                     KGPVAETLWSKDIYLQQAQTFRGAPGSQSKGTVVIIAFSSILLAILLAVFLMLVISAC
                     CSSTSVSSPEEQVRMRRYHTHHVGSLPAERSS"
     exon            156..308
                     /gene="Upk3bl1"
                     /gene_synonym="Upk3bl"
                     /inference="alignment:Splign:2.1.0"
     exon            309..528
                     /gene="Upk3bl1"
                     /gene_synonym="Upk3bl"
                     /inference="alignment:Splign:2.1.0"
     exon            529..605
                     /gene="Upk3bl1"
                     /gene_synonym="Upk3bl"
                     /inference="alignment:Splign:2.1.0"
     exon            606..726
                     /gene="Upk3bl1"
                     /gene_synonym="Upk3bl"
                     /inference="alignment:Splign:2.1.0"
     exon            727..975
                     /gene="Upk3bl1"
                     /gene_synonym="Upk3bl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctcaggagc ccggcccggc gagcggctgc acaggagacc tgaaggaagg atagctggaa
       61 gctcagcaca gccatggggc cccacaggaa acagtctatg ctgctgctgc ccctgttggt
      121 gctggtgact tgtgtccagc ccggaacagg tctggagagc attaactatg tcccccagct
      181 ccccagtgcc accctggagg ggagactcac acaatctacc ttcacgctgg agcaacccct
      241 ggaccaattc aagaatgtca acctctctga cgcagacccc atctggctgg tggtggctcg
      301 cagtgacact gcccagaact ttactgcccc acggaaggtg gaagacaggc acgcccctgc
      361 tcactttgac gacaatggct actacctcac actgagggcc agtcgggtgc actacaaggg
      421 cagccagaac gacagccggc ttccagtcct ccgtgtgggg aatgacaaca attgctccgt
      481 gagatcccag ggctgtaatt cgcctttgcc agggccaggg ccctacagag tgaaattcct
      541 ggcgatgaat gccaaaggac ctgtggctga gacgctgtgg tccaaggaca tctacctgca
      601 gcaagcccag acattccgag gagctccagg gtcccagagc aagggtactg tggtcatcat
      661 tgccttctcg tcaatcctac tggccatcct gcttgcggtc ttcctcatgt tggtcatatc
      721 tgcttgttgc tcgagcactt ccgtgtccag cccagaggag caagtgcgca tgcgacgata
      781 tcacacgcat catgtgggca gcctcccagc cgagcgcagc tcctgagagt ttctgagggc
      841 tttctccggg ggccgagtgg ctgagcctga gctggagtcc acctggaacc caagggaagg
      901 gttttcagtt caaatcttgg aataggcaat ctttatcaga aataaatgtc cgaaatacct
      961 ttgcgcttta tctca
//
