LOCUS       NM_001012159            1528 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus UPF3A, regulator of nonsense mediated mRNA decay
            (Upf3a), mRNA.
ACCESSION   NM_001012159 XM_341460
VERSION     NM_001012159.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Azzalin CM, Reichenbach P, Khoriauli L, Giulotto E and Lingner J.
  TITLE     Telomeric repeat containing RNA and RNA surveillance factors at
            mammalian chromosome ends
  JOURNAL   Science 318 (5851), 798-801 (2007)
   PUBMED   17916692
REFERENCE   2  (bases 1 to 1528)
  AUTHORS   Kunz JB, Neu-Yilik G, Hentze MW, Kulozik AE and Gehring NH.
  TITLE     Functions of hUpf3a and hUpf3b in nonsense-mediated mRNA decay and
            translation
  JOURNAL   RNA 12 (6), 1015-1022 (2006)
   PUBMED   16601204
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC088463.1.
            
            On Feb 11, 2005 this sequence version replaced XM_341460.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088463.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.5"
     gene            1..1528
                     /gene="Upf3a"
                     /note="UPF3A, regulator of nonsense mediated mRNA decay"
                     /db_xref="GeneID:361176"
                     /db_xref="RGD:1308778"
     exon            1..229
                     /gene="Upf3a"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..1246
                     /gene="Upf3a"
                     /note="UPF3 regulator of nonsense transcripts homolog A"
                     /codon_start=1
                     /product="regulator of nonsense transcripts 3A"
                     /protein_id="NP_001012159.1"
                     /db_xref="GeneID:361176"
                     /db_xref="RGD:1308778"
                     /translation="MRSEEGAGGLGAVLSARGPSWREKLSGAETHFRRESTRNESAAP
                     PAPALSESGVGKPREEKRTALSKVVLRRLPPGLTKEQLEEQLRPLPAHDYFEVVAADL
                     SLYPHLYSRAYINFRNPDDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKVK
                     KKDAKTGSIEDDPEYKQFLESYSLEEEKTSASPETLLGEIEAKTRELLARRTTPLLEY
                     IKNRKLEKQRLREEKREERRRRELEKKRLREEEKRKRREEDRCKRKDAEKQKRAEKDV
                     RIKLLKKLETGEEATTEKHKERGEAVGAGEEKQEARLVESQPETPGERLQDGSDKEPR
                     DKRFREKEPETPRCHDSCRKHSTHSEFARFSRRSEEEPKWRKGFTQDGGERGQDGGVP
                     ADGRAKQQGAQGV"
     exon            230..336
                     /gene="Upf3a"
                     /inference="alignment:Splign:2.1.0"
     exon            337..443
                     /gene="Upf3a"
                     /inference="alignment:Splign:2.1.0"
     exon            444..542
                     /gene="Upf3a"
                     /inference="alignment:Splign:2.1.0"
     exon            543..653
                     /gene="Upf3a"
                     /inference="alignment:Splign:2.1.0"
     exon            654..709
                     /gene="Upf3a"
                     /inference="alignment:Splign:2.1.0"
     exon            710..865
                     /gene="Upf3a"
                     /inference="alignment:Splign:2.1.0"
     exon            866..999
                     /gene="Upf3a"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..1502
                     /gene="Upf3a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggaggtggc ggcgggcggc cggtggggat gcgctcggaa gagggggccg gaggcctggg
       61 cgcagtcctt tctgcgcggg gcccgagctg gagggagaaa ctgtccggag cagagaccca
      121 tttccgccgc gagtctacgc ggaatgagtc ggcggcgccc ccggccccgg ccttaagtga
      181 gagcggggtc ggcaagcctc gcgaggagaa gaggacggcc ctgagcaagg ttgtcctccg
      241 gcgtctgccc ccgggcctca ccaaagagca gctggaagag caactgcgtc ctctacccgc
      301 gcacgattac ttcgaggtgg tggctgcgga cctcagcctc taccctcacc tctactccag
      361 agcgtacatt aattttagga accctgatga catcctgctg ttcagagacc gttttgatgg
      421 atacatcttc attggcaata aaggcctgga gtaccctgca gtggtggagt ttgctccatt
      481 ccagaagatt gccaaaaaga aggtgaagaa aaaggatgcc aagaccggaa gcatcgaaga
      541 cgacccagag tataaacagt tcctggagtc gtacagcttg gaggaagaaa agaccagcgc
      601 tagtcctgag acactgctgg gagagataga ggcgaagacg agagagttgc tggccagaag
      661 aaccacacct cttttggaat atattaaaaa cagaaaatta gaaaagcaga gactccggga
      721 agaaaaacgc gaggagcgga ggaggaggga gctggagaag aagcgtctgc gggaggaaga
      781 gaagaggaag cggagagaag aggacaggtg taaaaggaaa gatgcagaaa aacagaagcg
      841 agcggagaag gacgtgagga tcaagcttct taagaaactg gaaacgggag aagaagcgac
      901 cactgagaaa cacaaagaaa gaggtgaagc cgttggtgct ggcgaggaga agcaggaagc
      961 ccggctggtg gagagccagc cggagacacc tggggagagg ttacaggacg gcagtgataa
     1021 agaaccaagg gacaaaagat ttcgagagaa agagcctgag actccgagat gccatgacag
     1081 ttgcagaaag cacagcactc actcagagtt tgccaggttt tccagaagga gcgaggagga
     1141 gccaaagtgg aggaaaggct tcacccagga cggaggggag aggggccagg acgggggcgt
     1201 ccctgcggat ggcagagcaa agcagcaagg agcacaagga gtatgacaga cgtcttccct
     1261 gttgaggtgt gcgcggacac agtgtgctct gccgtctcac agccattttg cccaaataga
     1321 aatccttact aagctggagg agagcagtct gcggtgtgtg cagtccaggg tcgcactgtc
     1381 tgtgtcagct tgcatgccca tgcggaagga attgcaaagt cctcgtctgt tagggcattc
     1441 gtgctcatct gggatgcact gaacttggaa ctaaattcag aataaaacat tccatcatct
     1501 ttaaaaaaaa aaaaaaaaaa aaaaaaaa
//
