LOCUS       XM_006246057            4786 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus unk like zinc finger (Unkl),
            transcript variant X1, mRNA.
ACCESSION   XM_006246057
VERSION     XM_006246057.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086028) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On May 7, 2024 this sequence was replaced by
            NM_001430172.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006246057.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4786
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4786
                     /gene="Unkl"
                     /note="unk like zinc finger; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 172
                     long SRA reads, 11 Proteins"
                     /db_xref="GeneID:302987"
                     /db_xref="RGD:1565247"
     CDS             78..2261
                     /gene="Unkl"
                     /codon_start=1
                     /product="putative E3 ubiquitin-protein ligase UNKL
                     isoform X1"
                     /protein_id="XP_006246119.1"
                     /db_xref="GeneID:302987"
                     /db_xref="RGD:1565247"
                     /translation="MPSVSKAAAAALSGSPPQTEKPTHYRYLKEFRTEQCSLFLQHKC
                     SQHRPFTCFHWHFLNQRRRRPLRRRDGTFNYSPDVYCSKYDEATGLCPDGDECPYLHR
                     TTGDTERKYHLRYYKTGTCIHETDARGHCVKNGLHCAFAHGPLDLRPPVCDIRELQAQ
                     EALQNGQLSGGDGVPDLQPGVLASQAMIEKILGEDPRWQDSNFVLGSYKTEQCPKPPR
                     LCRQGYACPHYHNSRDRRRNPRRFQYRSTPCPSVKHGDEWGEPSRCDVGDSCQYCHSR
                     TEQQFHPEIYKSTKCNDMRQTGYCPRGPFCAFAHIEKSLGMVNEWSCRDLSSNSTSAY
                     SSQPGSAKRKDSPSEGSQKATEDSKQNHLAVFSVVHPLAPSISSSVASSLASSTGSGS
                     SSPTTLPNLPARALPLDPAGNTVEAVIGSALDLRLSDINIASLDKDLEEQDLGLTGPR
                     SLAGSAPVTIPGSLPRSPSLHSSSSLSTSPLSSLSQSLSGPLVSSAMTPPQQPPPLRS
                     EPATLGSTASSYSSLGLNGVPGSIWDFVSGSFSPSPSPILNSGPSASSSASPNSAELA
                     RVRRQLDEAKRKIRQWEESWQQVKQACDAWQREAQEAKERARVADSDRQLALQRKEEV
                     EAQVKQLQEELEGLGLSSLPGLRSLGDISDIPLPKLHSLQSQLRLDLEAVDGVIFQLR
                     AKQCVACQERAHGTVLRPCQHRVLCEPCAASTPECPYCKGQPLPW"
     polyA_site      4786
                     /gene="Unkl"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcgcaggggg ctcggagcgg gggggagatc cgggggcgcc ggcgcggcgc atgcgcgctg
       61 cattgttttg actgaaaatg ccgtcggttt cgaaagctgc ggcggcggcg ctgagcgggt
      121 cccccccgca gaccgagaaa ccaacccact acaggtatct aaaggagttt aggacagagc
      181 agtgctccct gtttttgcag cataagtgca gccagcacag gccgttcacc tgtttccatt
      241 ggcatttcct aaatcagcgt cggcgcagac cgctccgacg acgcgatggc accttcaact
      301 acagcccgga cgtttactgt tccaagtacg atgaggccac cggcctgtgt cccgacggtg
      361 acgaatgccc ttacctgcat cgaacaactg gggacacgga gcgcaagtac cacctacgct
      421 actacaagac gggcacgtgt attcacgaga cagatgcacg gggtcactgt gtgaagaatg
      481 ggctgcactg tgccttcgca cacgggcccc tggaccttcg gccgcctgtg tgtgacatca
      541 gggagcttca ggctcaggaa gccctgcaaa atggccagct cagcggaggg gacggtgtgc
      601 ctgacctgca gcctggggtc ttggccagcc aggccatgat cgagaagatc ctgggtgagg
      661 atcctcggtg gcaagacagt aactttgtgt tgggcagcta taagaccgag cagtgcccga
      721 agccaccacg cctatgtcgc cagggctacg cctgtccaca ttaccacaac agcagagacc
      781 gacgtcggaa ccctaggagg ttccagtaca ggtctacgcc ctgccctagt gtgaagcacg
      841 gtgacgagtg gggtgagccc tcacggtgtg acgttgggga cagctgtcaa tactgccatt
      901 cccgcacgga gcagcagttc catcctgaga tctacaaatc tacaaaatgc aacgatatgc
      961 gccaaactgg ctactgccct cggggcccgt tctgtgcctt tgcacacatt gagaagagcc
     1021 tgggaatggt gaatgagtgg agctgccgtg atctcagttc taacagcacc tcagcttaca
     1081 gcagccaacc tggaagtgcc aaacggaaag attccccctc tgaaggcagc cagaaagcta
     1141 ctgaggacag caagcagaac cacctcgctg tgttctcagt ggttcaccca ctggctccca
     1201 gcataagctc cagtgtggca tccagcctgg catccagcac tggctcaggt agctcctccc
     1261 ccaccacgct gcccaacctc cctgcccgcg ccctcccact ggatccagct ggcaacactg
     1321 tggaggcggt cataggttct gccttagatc ttcgtcttag tgacataaac atcgcgtcct
     1381 tagataaaga cttagaagag caggaccttg gactgacagg tcccaggtcg ctggcaggct
     1441 cagcacccgt caccattccg ggctccctgc cccgctcgcc atccttgcac tcgtcctcat
     1501 ccctgtccac ctccccactc agctcgctct cccagtccct gtcggggcca ctcgtctcct
     1561 cggccatgac gcccccccag cagccaccac ccctccggtc ggagccggct acgctgggct
     1621 ctacagcctc atcttacagc tctttaggtt tgaacggcgt ccctgggagc atctgggact
     1681 ttgtttctgg cagcttctct cctagcccat cccccattct gaactctggc ccttcggctt
     1741 cctcaagtgc aagtccaaac agtgctgagc tggcacgggt caggcgacag ctggatgagg
     1801 ccaagaggaa gatcaggcag tgggaagaat cttggcagca agtgaagcag gcctgtgatg
     1861 cctggcagag agaggctcag gaggccaagg aaagagcccg tgtggcggac agtgaccggc
     1921 agctggcctt gcagaggaaa gaagaggtgg aggcccaggt gaagcagctg caggaagaat
     1981 tagagggcct gggtttgtcc tcactgccag ggcttcggag cttgggtgat atcagtgaca
     2041 tccctctccc caagctgcat tctctccaga gccagctgcg attggacttg gaggctgtgg
     2101 atggggtgat cttccaactc cgtgccaaac agtgtgtggc ctgccaggag cgggcccatg
     2161 gcactgtcct gcggccctgc cagcaccgtg tcttatgcga accatgtgca gccagtaccc
     2221 ctgagtgccc ctactgcaag ggccagcccc tcccatggta accagagcca gacccattcc
     2281 ttccctggtg agcagtacaa agacctgggc atgccatgtg ccactgcatc ggaacttgcc
     2341 tccagagctc cacgccggga tgtgagttca tgcccactgt caacagcctt tcataatact
     2401 tttcttccct accatgtccc accatcggtg tcaaggtatt atcaaaaaac ctttgaagca
     2461 ccaccaaacc cactgcctgt ccctaggcag gtgtggcatg tttttggtgc ccccagtcct
     2521 gaggctgctg tggccaggcc aatgggaggt caggccttgt caaagcactt tgtaaaccga
     2581 ggaattagac gttataaatt gtataagctg ctttctaggt catggttttt aatatgcgat
     2641 aacatgaagc tttataagta tactgtgaac ttgaagtttc ctatcagttt gtggttaact
     2701 catagtaatg gtaactctgt tagatttcat attctgaaac tatttaggaa aggaacattt
     2761 atctagtagt gaagaactag aatttttaca ttttaaaatt aagtgcaaac aaatagtatt
     2821 tataagcaga gagtggttat tgaaagacac atatacattt agatgttctt aattttatgg
     2881 aaggaactaa ttttcctaaa catgtgctgg tgcacatgta ggtggagttt tatattccag
     2941 tatcagagtg atatccagaa ctgtcacgca cttatgtgat ccgtggccac ttccaagtgc
     3001 ctgtgccttg caagagaagt gaagaattgg ttcattgggt tttctcttct ccctcgaaag
     3061 acaatttcat gctaatgaaa aatgcagcag aggaatcaga cgttcagagg agtccaaggt
     3121 ctactcgggg aggagctgtg ctctgatgtc ctgtctgtaa tggcaacggt gctttgtgac
     3181 ctctgcgtcg cctggggcgc cccagcttgt gctgaacaaa ggggctgtga ccctgagact
     3241 tgcagtctgc ggcactgtga ccaccctcac ctctagctga tacagaggtg cccggcggca
     3301 cgaggccatg agtttagcac acatccggta cctgagctgc acacccagac actactggaa
     3361 ctcatcacac gaccagcaac cacagcgtcg ctgcagttta cccatcagct tccaaggcga
     3421 aggcaggggc gctgctcaca gcttggccca tggctcaagt tctgctgaga cttcagccct
     3481 ccacagtaaa gactgggact gctcctggaa atctagggag gagacctctg tccaggtgat
     3541 ccctgcccat ggtggcagac ctagacaggg taggtatcct acctgcaggt tctgcccagg
     3601 cctcgaagtg gttctccttc cctatggctt tgccaaagac ttttaatagc attttttaag
     3661 tgcaaagtga ctagataaaa catttttatc agtgaccaaa ttagaatgta tttaatatag
     3721 taggaaattt aaaagcattt tttaatataa gacagactgg tagaaaaagc ctatcatttt
     3781 aaaggaaatg gatcttcaac attccacagc tagcccacta cttaataagg taactattga
     3841 cctgatttca gtgacttttg ttttttaatt atagtgataa tgatttatta gctcaatacc
     3901 tagatcatgt gtattttgtg ctactgttac catggtttaa gattgtttat ttttattcat
     3961 atttatgcac tgtttcccat gtcaggcctt tggtctctgt ggtaacagga cagtgtttgt
     4021 gattggtagc tcatctgaac aatttcaagt tgtaacagta acaagcatta agctttagat
     4081 tgtatgtaaa ctactctggt taactcctcc tgggctgaca ttccaggctg aggctggggc
     4141 agttatggct ggggaggcag gaggtagtgc acactgggcc ccatcccatg aggggagctt
     4201 ccccaagcat ctgctcctct ggagtcagac tgcgctctga ggacaggtgc gaggggaaga
     4261 ccaaagaact tcccagaagg ggccacttcc catctattcc agacctctca tgagccgagg
     4321 cttctaggat ctaccctggg tgggaagggc caagaagcga gaggggggct taaggcccat
     4381 atgtgggtaa tggaggtggg gccatgggtc taggaactga gacccaccat tgtcctgatg
     4441 cctgttgtct tctaactctc tagtgttaaa tagtgacagt aaatgatagt gtcgaagtct
     4501 tgtgtacctg gttggcaggc ctccccgcag tgtggatgcg catgtggagt aacttatgga
     4561 agcctttgtg tgcatttgtt ctcagaaatt agttgagaat gttatgtgaa tgggatcttc
     4621 ttaacccaga tggtcatatt tataatacat acccattact ttagtgaatt gttaaagttg
     4681 ttaacatttg tttaaatttt tttacaatag catttatgca atggtttaca gaagtcatgg
     4741 agttattttt tatgagtatg gaattaatta aaacttcgaa tcttta
//
