LOCUS       NM_001107319            3057 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus unc-5 netrin receptor D (Unc5d), mRNA.
ACCESSION   NM_001107319 XM_001069726 XM_240446
VERSION     NM_001107319.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3057)
  AUTHORS   Lu,Y.C., Nazarko,O.V., Sando,R. 3rd, Salzman,G.S., Li,N.S.,
            Sudhof,T.C. and Arac,D.
  TITLE     Structural Basis of Latrophilin-FLRT-UNC5 Interaction in Cell
            Adhesion
  JOURNAL   Structure 23 (9), 1678-1691 (2015)
   PUBMED   26235030
REFERENCE   2  (bases 1 to 3057)
  AUTHORS   Miyoshi,G. and Fishell,G.
  TITLE     Dynamic FoxG1 expression coordinates the integration of multipolar
            pyramidal neuron precursors into the cortical plate
  JOURNAL   Neuron 74 (6), 1045-1058 (2012)
   PUBMED   22726835
REFERENCE   3  (bases 1 to 3057)
  AUTHORS   Yamagishi,S., Hampel,F., Hata,K., Del Toro,D., Schwark,M.,
            Kvachnina,E., Bastmeyer,M., Yamashita,T., Tarabykin,V., Klein,R.
            and Egea,J.
  TITLE     FLRT2 and FLRT3 act as repulsive guidance cues for Unc5-positive
            neurons
  JOURNAL   EMBO J 30 (14), 2920-2933 (2011)
   PUBMED   21673655
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3057)
  AUTHORS   Sasaki,S., Tabata,H., Tachikawa,K. and Nakajima,K.
  TITLE     The cortical subventricular zone-specific molecule Svet1 is part of
            the nuclear RNA coded by the putative netrin receptor gene Unc5d
            and is expressed in multipolar migrating cells
  JOURNAL   Mol Cell Neurosci 38 (4), 474-483 (2008)
   PUBMED   18547816
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On or before Sep 3, 2010 this sequence version replaced
            XM_240446.5, XM_001069726.2, NM_001107319.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMN12840105 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-97                JAXUCZ010000016.1  69563411-69563507
            98-316              JAXUCZ010000016.1  69864364-69864582
            317-460             JAXUCZ010000016.1  69881044-69881187
            461-564             JAXUCZ010000016.1  69904154-69904257
            565-745             JAXUCZ010000016.1  69994502-69994682
            746-913             JAXUCZ010000016.1  69995503-69995670
            914-1078            JAXUCZ010000016.1  69997293-69997457
            1079-1111           JAXUCZ010000016.1  70014945-70014977
            1112-1126           JAXUCZ010000016.1  70031701-70031715
            1127-1312           JAXUCZ010000016.1  70032481-70032666
            1313-1690           JAXUCZ010000016.1  70037077-70037454
            1691-1775           JAXUCZ010000016.1  70041327-70041411
            1776-1944           JAXUCZ010000016.1  70060363-70060531
            1945-2172           JAXUCZ010000016.1  70062078-70062305
            2173-2322           JAXUCZ010000016.1  70073642-70073791
            2323-2487           JAXUCZ010000016.1  70081117-70081281
            2488-2666           JAXUCZ010000016.1  70089770-70089948
            2667-3057           JAXUCZ010000016.1  70103688-70104078
FEATURES             Location/Qualifiers
     source          1..3057
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.3"
     gene            1..3057
                     /gene="Unc5d"
                     /note="unc-5 netrin receptor D"
                     /db_xref="GeneID:306534"
                     /db_xref="RGD:1309245"
     CDS             1..2871
                     /gene="Unc5d"
                     /note="netrin receptor UNC5D; unc-5 homolog D; protein
                     unc-5 homolog D"
                     /codon_start=1
                     /product="netrin receptor UNC5D precursor"
                     /protein_id="NP_001100789.2"
                     /db_xref="GeneID:306534"
                     /db_xref="RGD:1309245"
                     /translation="MGTGAADRSRGARWWLPWLGLCFWAAGAEAARGADSGEVLPDSI
                     PSAPGTLPHFIEEPEDAYIIKSNPIALRCKARPAMQIFFKCNGEWVHQNEHVSEESLD
                     ESSGLKVREVFINVTRQQVEDFHGPEDYWCQCVAWSHLGTSKSRKASVRIAYLRKNFE
                     QDPQGREVPIEGMIVLHCRPPEGVPAAEVEWLKNEEPIDSEQDENIDTRADHNLIIRQ
                     ARLSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWSSWTEWSACNVRCGRGWQKRSRT
                     CTNPAPLNGGAFCEGMSVQKITCTALCPVDGSWEVWSEWSVCSPECEHLRIRECTAPP
                     PRNGGKFCEGLSQESENCTDGLCILDKKPLHEIKPQRWSRRGIENASDIALYSGLGAA
                     VVAVAVLVIGVTLYRRSHSDYGVDVIDSSALTGGFQTFNFKTVRQGNSLLLNPAMHPD
                     LTVSRTYSGPICLQDPLDKELMTESSLFNPLSDIKVKVQSSFMVSLGVSERAEYHGKN
                     HSGTFPHGNNRGFSTIHPRNKTPYIQNLSSLPTRTELRTTGVFGHLGGRLVMPNTGVS
                     LLIPHGAIPEENSWEIYMSINQGEPSLQSDGSEVLLSPEVTCGPPDMLVTTPFALTIP
                     HCADVSSEHWNIHLKKRTQQGKWEEVMSVEDESTSCYCLLDPFACHVLLDSFGTYALT
                     GEPITDCAVKQLKVAVFGCMSCNSLDYNLRVYCVDNTPCAFQEVVSDERHQGGQLLEE
                     PKLLHFKGNTFSLQISVLDIPPFLWRIKPFTACQEVPFSRVWSSNRQPLHCAFSLERY
                     TPTTTQLSCKICIRQLKGHEQILQVQTSILESERETITFFAQEDSTFPAQTGPKAFKI
                     PYSIRQRICATFDTPNAKGKDWQMLAQKNSINRNLSYFATQSSPSAVILNLWEARHQQ
                     DGDLDSLACALEEIGRTHTKLSNITEPQLDDTDFNYSRQNGL"
     exon            1..97
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            98..316
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            317..460
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            461..564
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            565..745
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            746..913
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            914..1078
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1111
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            1112..1126
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            1127..1312
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            1313..1690
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            1691..1775
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..1944
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            1945..2172
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            2173..2322
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            2323..2487
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            2488..2666
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
     exon            2667..3057
                     /gene="Unc5d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggggacag gggctgcaga ccgcagccgc ggggcgcgct ggtggctccc atggcttgga
       61 ctctgtttct gggcggcggg ggctgaggct gcccgaggag ccgacagtgg cgaagttctt
      121 cccgactcca tcccgtctgc ccctggaact ctgccccatt tcatagagga gcctgaagat
      181 gcctacatca tcaaaagcaa ccctatcgca ctcaggtgca aagccaggcc cgccatgcag
      241 atcttcttca aatgcaacgg ggagtgggtc catcagaacg agcacgtgtc agaagaaagc
      301 ctggatgaga gctcaggctt gaaggtccgg gaggtgttta tcaatgtcac caggcagcag
      361 gtggaggact tccatgggcc cgaggactac tggtgccagt gtgttgcgtg gagccacctt
      421 ggaacttcca agagtaggaa agcttccgtg cgcatagcct atttacggaa aaacttcgag
      481 caagatccac aaggcaggga ggttcctatt gaaggcatga tcgtattgca ctgccgcccg
      541 ccagagggag ttccagcagc agaggtggaa tggctgaaaa atgaagagcc cattgactct
      601 gaacaggatg agaacattga caccagggct gaccataacc tgatcatcag gcaggcccgg
      661 ctctcagact cggggaatta cacctgtatg gcagccaaca tcgtggccaa gaggaggagc
      721 ctgtcagcaa ctgtggtggt ctacgtgaat ggaggctggt cttcctggac agagtggtca
      781 gcctgcaatg ttcgctgtgg tagaggatgg cagaaacgtt cccggacctg caccaacccc
      841 gctcctctca atggtggggc cttttgtgag ggaatgtcag tgcagaaaat aacctgcact
      901 gctctttgtc ctgtggacgg cagctgggaa gtatggagtg aatggtcagt ctgcagccca
      961 gagtgtgaac atcttcgcat ccgtgagtgc acagctccac ccccaagaaa cgggggcaag
     1021 ttctgtgaag ggctcagcca ggaatctgaa aactgcacgg atggtctctg cattctagat
     1081 aaaaaacctc ttcatgaaat aaaaccccaa agatggagta ggcgaggcat tgagaatgcc
     1141 agcgacattg ctttgtactc gggcttgggt gcagccgttg tagccgttgc ggtcctggtc
     1201 attggtgtca ccctctacag acggagccat agtgactacg gagtggacgt cattgactct
     1261 tctgcattga caggtggctt ccagaccttc aacttcaaaa cagttcgtca aggaaattct
     1321 ctcctcctga atcctgccat gcatccagat ctgactgtga gccggacgta cagcgggccc
     1381 atctgtctgc aggatccact ggacaaggag ctcatgacag agtcctcact cttcaaccct
     1441 ctctctgaca tcaaagtcaa agtccagagc tcattcatgg tttccctggg agtgtctgag
     1501 agagccgagt accatggcaa gaatcactcc gggaccttcc cccatggaaa caaccgtgga
     1561 tttagtacca tacatcccag aaacaagact ccgtacatcc aaaatctgtc gtcactgccc
     1621 acaaggacgg agctgaggac aactggtgtc tttggacact taggggggcg cttagtaatg
     1681 ccaaatacag gggtgagtct actcatacca catggtgcca tcccagagga gaattcttgg
     1741 gagatttata tgtcaatcaa ccaaggtgaa cccagtctgc agtcagatgg atctgaggtc
     1801 ctcctgagtc ctgaagtcac ctgtgggcct ccagatatgc ttgtcacaac tccctttgca
     1861 ctgaccatcc ctcactgtgc agacgtcagt tcagagcatt ggaacatcca cttgaagaag
     1921 agaacgcagc agggaaagtg ggaggaagta atgtcagtgg aggatgagtc cacatcctgt
     1981 tactgcctct tggatccctt cgcctgtcat gtgctgcttg atagctttgg aacgtatgcc
     2041 ctcacgggag agcccatcac agactgtgcg gtaaagcagc tcaaggtggc tgtgtttggc
     2101 tgcatgtcct gtaactcctt ggattacaac ctgagagttt attgtgtgga caacactcct
     2161 tgtgcatttc aggaagtggt ttctgatgaa cggcaccaag gcggccagct cctggaggag
     2221 ccaaagctgc ttcatttcaa agggaataca ttcagtcttc agatctctgt ccttgacatc
     2281 cctccattcc tctggaggat caaaccattc actgcatgcc aggaagtccc cttctccaga
     2341 gtgtggagca gcaaccggca gcccctgcat tgtgccttct ccctggagcg ctacacgccc
     2401 accaccaccc agctgtcctg caaaatctgc attcggcagc tcaaaggcca tgaacagatc
     2461 ctccaagtgc agacatccat cctagagagt gaacgagaaa ccatcacttt cttcgcacaa
     2521 gaggacagta ctttccctgc acagactggc ccgaaagcct tcaaaattcc ctattccatc
     2581 aggcagagga tctgcgcaac gttcgatacc cccaatgcca aaggcaagga ctggcagatg
     2641 ttagcacaga aaaacagcat caataggaat ttatcctatt ttgctacaca aagcagtccc
     2701 tctgctgtca ttttgaacct ctgggaagct cgtcatcaac aggacgggga tcttgactcg
     2761 ctcgcctgtg cccttgaaga gattgggagg acacacacga aactatcaaa catcacagag
     2821 ccccagctcg atgacactga cttcaactac agcaggcaaa atggactcta gttggtttct
     2881 tctcttgaag cagcgctagt gatggccagc ttcagagcag tggcttcaag tggggaagat
     2941 gaggcagatt tctgcctagg ggcattttgg gggaactgag cctttattga gaatcagtga
     3001 gaatccctgg atgaaggaaa taagtttgat gtaggtaaaa catgttaaca gtgggaa
//
