LOCUS       NM_001106882            2921 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus unc-5 family C-terminal like (Unc5cl), mRNA.
ACCESSION   NM_001106882 XM_001063261 XM_236916
VERSION     NM_001106882.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2921)
  AUTHORS   Heinz,L.X., Rebsamen,M., Rossi,D.C., Staehli,F., Schroder,K.,
            Quadroni,M., Gross,O., Schneider,P. and Tschopp,J.
  TITLE     The death domain-containing protein Unc5CL is a novel
            MyD88-independent activator of the pro-inflammatory IRAK signaling
            cascade
  JOURNAL   Cell Death Differ 19 (4), 722-731 (2012)
   PUBMED   22158417
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            [WARNING] On Jul 24, 2024 this sequence was replaced by
            NM_001106882.3.
            
            On Jun 4, 2021 this sequence version replaced NM_001106882.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760389
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-55                JAXUCZ010000009.1  20039787-20039841   c
            56-505              JAXUCZ010000009.1  20033998-20034447   c
            506-806             JAXUCZ010000009.1  20033220-20033520   c
            807-1069            JAXUCZ010000009.1  20031693-20031955   c
            1070-1171           JAXUCZ010000009.1  20030927-20031028   c
            1172-1239           JAXUCZ010000009.1  20030752-20030819   c
            1240-1340           JAXUCZ010000009.1  20029841-20029941   c
            1341-1454           JAXUCZ010000009.1  20029300-20029413   c
            1455-2921           JAXUCZ010000009.1  20025719-20027185   c
FEATURES             Location/Qualifiers
     source          1..2921
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q12"
     gene            1..2921
                     /gene="Unc5cl"
                     /note="unc-5 family C-terminal like"
                     /db_xref="GeneID:301225"
                     /db_xref="RGD:1587368"
     exon            1..55
                     /gene="Unc5cl"
                     /inference="alignment:Splign:2.1.0"
     exon            56..505
                     /gene="Unc5cl"
                     /inference="alignment:Splign:2.1.0"
     CDS             121..1677
                     /gene="Unc5cl"
                     /note="unc-5 homolog C-like"
                     /codon_start=1
                     /product="UNC5C-like protein"
                     /protein_id="NP_001100352.2"
                     /db_xref="GeneID:301225"
                     /db_xref="RGD:1587368"
                     /translation="MSPQESSVQPFQFLLLVGIPVASVLLLVQCLRWHRCRWPPGSCQ
                     KPDDPEEPVSPSTPLPEYELPKQCQAPTLPEVAAFYQELHMPTRGQTITRQLMNKLLV
                     FSAREVDHRGGCLMLQDTGISLLIPPGAVTVGRQERVSLVLVWDLTDAPSLSHKQGLV
                     SPVVACGPHGASFLKPCILTFKHCAQQPSQVCAYSSNTSLLDAKDWRPLGQPGTHTSR
                     DECRILLSHFSLYTCVLEPPLGQTARKWLQLAMFCSPLAPGQTHLQLRVYFLNNTPCA
                     LQWAITNEQPHGGRMRGPCQLFDFTGARADQCLKLKYISEGWENVDDSSSQLVPHLHI
                     WHGKCPFRSFCFRRKSANGNEECSTLTNEIIVTMHTFQDGLETKYMEILRFQASEEET
                     WAVPPPVSQPPLCNRLPPELFEQLQMLLEPSSVTGNDWRKLASHLGLCGMKIRFLSCQ
                     RSPAAAILELFEEQNGSLQELHYLMTSMERLDCASAIQNYLNRTPGDSPTRLRGGTWE
                     NCGLELDEKF"
     exon            506..806
                     /gene="Unc5cl"
                     /inference="alignment:Splign:2.1.0"
     exon            807..1069
                     /gene="Unc5cl"
                     /inference="alignment:Splign:2.1.0"
     exon            1070..1171
                     /gene="Unc5cl"
                     /inference="alignment:Splign:2.1.0"
     exon            1172..1239
                     /gene="Unc5cl"
                     /inference="alignment:Splign:2.1.0"
     exon            1240..1340
                     /gene="Unc5cl"
                     /inference="alignment:Splign:2.1.0"
     exon            1341..1454
                     /gene="Unc5cl"
                     /inference="alignment:Splign:2.1.0"
     exon            1455..2921
                     /gene="Unc5cl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agggagctat tgcttctgga cgggccccgt gggtagccag tcgacattaa ggcaagccct
       61 cggccttgac tgatgcaggg gtgtggaaga gccagcagca ctgattgagt gaccaggcgg
      121 atgagccccc aggagagttc tgtgcaacct ttccagttcc tcctgctggt ggggatccct
      181 gtggccagtg ttcttcttct ggttcagtgt cttcgatggc accgttgtcg gtggccgcca
      241 gggtcctgcc agaagccgga tgacccagaa gagccagtgt ccccatctac tccattacca
      301 gaatatgagc tcccaaagca gtgccaagcc cccacgctac cggaggtagc tgcattctat
      361 caggaactcc acatgcctac ccggggccag accatcaccc gacagctgat gaacaagctg
      421 ctggtgtttt ctgctcgaga ggtagatcac cgcggcggat gcctgatgct gcaagacacg
      481 ggcatctccc tgctcatccc tccaggtgcc gtgaccgtgg gtcgccagga aagggtgtcc
      541 ttggttctgg tttgggacct gacagatgcc ccgtcgttgt ctcacaaaca gggactagtg
      601 agtcctgtgg tggcctgcgg ccctcacggg gcctctttcc tgaagccctg catactcaca
      661 ttcaagcact gcgcccagca gccgagtcaa gtctgtgcct acagcagcaa tacctccttg
      721 ctggatgcca aggactggag gcccctgggc cagccgggga ctcatacctc cagggatgag
      781 tgccgtatcc tgctctctca cttcagtctc tacacctgtg ttctggagcc acccctgggc
      841 cagacagccc gcaagtggct gcagctggca atgttctgct ccccactggc accagggcag
      901 acacaccttc agctgcgcgt ctacttccta aacaatactc cctgcgccct gcagtgggct
      961 atcaccaacg aacagccgca tggaggacgc atgcgcgggc cctgccagct cttcgacttc
     1021 actggggccc gagcagacca atgcctgaag ctcaagtaca tctccgaggg ttgggagaat
     1081 gtggatgaca gcagtagcca actggttccc catctccaca tctggcatgg aaagtgcccc
     1141 ttccgttcct tctgcttccg gagaaagtca gccaatggga atgaagagtg ctcgacttta
     1201 accaatgaga tcattgtcac catgcacacc ttccaggatg gcttggaaac caaatacatg
     1261 gaaatcctca gattccaggc ctcagaggag gagacctggg cggttccccc tcctgtctcc
     1321 cagccgcccc tgtgcaacag gctgccccca gagctctttg agcagctgca gatgttgttg
     1381 gagcccagca gtgtcactgg gaatgactgg cgcaaactgg cctcccacct ggggctctgt
     1441 ggcatgaaaa tccggttctt gtcctgccag cgtagccccg ccgcggccat tctggaattg
     1501 tttgaggaac agaatggcag tctgcaagag ctgcactacc tcatgacctc catggagcgg
     1561 ctggactgcg cttctgccat tcagaactac cttaaccgga ctccggggga cagccctacc
     1621 aggttgcgcg gaggtacctg ggagaactgt ggcctagagc tggatgagaa attctaagca
     1681 ggctccgcgg ccgtgcaggg tgcttcaaga ggccatgtca tgccatgcct ttgagctggg
     1741 gaccaattct gcagttccag gtggatcgag ctggaacccc cagtgaggcc agatagcctt
     1801 atcatctgcc ctgcatcagg ataactctgt atcctaccgg ccaactttgc cctgcgtgca
     1861 ggttcgctct tggtcagtag ggggcgcggg agtctgggag atggccacag ctaagccagc
     1921 ttccaagatg ctgtttaatt ttctcgcgga cggccaggtg gccctgcagg catacctcag
     1981 agactgctca gtccacaaat attcatggag cactgagtct cagcaccaag ctgggattgt
     2041 gaggaacgtc ggcttctttg aacttgcctt ggagtcggtt cttcgaaatg gagatgttct
     2101 accagctagc tgagagcaac attcttgaca gtatctccct gtggttaggg gatgtcacgg
     2161 gtgtgtaact ttgttgagaa gggagggcgc tgaggtgggc tggaacaaag agaaatctct
     2221 agagaggata ttggggaaga tctttggggg gctcggggaa taggtgggtg cacagggtgg
     2281 gtgcacaggg atgctgtaac gagctcgctt cattgatgtg agggatgggt agcagagggt
     2341 tcaaggccct gctcctcccc cttcatctct tcacgggcag ctcccacctt gtcttccttc
     2401 ccagccattg tttctctcat cacggagctg agaagcctca ggacgcacac cccctgcctc
     2461 tccgcctcca gctgagagtg ttaagtctcc cgcttccttt tcctgccctt gccctgtctc
     2521 agagtcagcc tctccgttac ttgtgtcttc atgttgctct gtctccatct agctatggaa
     2581 tcccatcttt gtgtttcttt ctctattagg aagagaaatc cagtcactcc ctcaggcaag
     2641 tgtctgagct aatgctatgt atgaaggcta ctgagagaac ctcggctatt ccaggagtga
     2701 acgagtagag ctatttccct cacagatcaa gatccccctt agggtcagga ttaaagacta
     2761 ggggttaaag gacccccatc cccgacccga tccagtcagc agtgctggct actaatactc
     2821 ctgcttacgg atagttttct tcatttgtcc aaaggtagac aatctctttg gaggtaataa
     2881 caatccgctt cggtatttaa ttaaaatatt ggtacttttg a
//
